Updated on 2026/04/01

写真a

 
TABATA RYO
 
Organization
Undergraduate School School of Agriculture Associate Professor
Title
Associate Professor
Profile

植物の土壌環境ストレス適応戦略に関して、根から空腹を伝える「空腹シグナル」と、根へ栄養吸収を促す「指令シグナル」に着目し、根と葉をつなぐ器官間コミュニケーションの仕組みを理解し、制御することを目指しています。

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Degree

  • 博士(農学) ( 2010.3   名古屋大学 )

Research Interests

  • cell-to-cell/organ-to-organ communication

  • peptide hormone

  • 鉄欠乏応答

  • 空腹(栄養欠乏)ストレス

  • 環状ペプチド

  • 受容体キナーゼ

Research Areas

  • Life sciences / Plants: molecular biology and physiology

  • Life sciences / Plant nutrition, soil science

  • Life sciences / Molecular biology

Education

  • Nagoya University   Graduate School of Bioagricultural Sciences   Department of Biological Mechanisms and Functions

    2004.4 - 2007.9

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  • Nara Institute of Science and Technology   Graduate School of Biological Sciences

    2002.4 - 2004.3

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  • Niigata University   Faculty of Agriculture

    1997.4 - 2002.3

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Research History

  • 明治大学 農学部農芸化学科   専任准教授

    2024.4

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  • 名古屋大学 生命農学研究科   客員准教授

    2024.4 - 2026.3

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  • 国立研究開発法人 科学技術振興機構(JST)創発研究者

    2023.4

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  • 名古屋大学 若手新分野創成研究ユニット 代表

    2022.4 - 2024.3

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  • 名古屋大学 生命農学研究科/高等研究院 特任講師

    2018.5 - 2024.3

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  • 名古屋大学 登龍門推進室/生命農学研究科 特任助教

    2016.4 - 2018.4

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  • 名古屋大学 理学研究科 生命理学専攻 博士研究員

    2014.4 - 2016.3

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  • National Institute for Basic Biology

    2013.4 - 2014.3

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  • 熊本大学 自然科学研究科 理学専攻 文部科研研究員

    2010.10 - 2013.3

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  • 東京大学 理学系研究科 生物科学専攻 特任研究員

    2010.4 - 2010.9

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  • 名古屋大学 生命農学研究科 COE研究員

    2007.10 - 2010.3

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  • 社団法人 国際農業者交流協会 オランダ農業研修生(切り花農家にて就労)

    2000.4 - 2001.3

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Professional Memberships

  • THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS

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  • JAPANESE SOCIETY OF SOIL SCIENCE AND PLANT NUTRITION

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  • THE BOTANICAL SOCIETY OF JAPAN

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Papers

  • Autophagy is induced during plant grafting to promote wound healing. Reviewed International journal

    Ken-Ichi Kurotani, Daiki Shinozaki, Kentaro Okada, Ryo Tabata, Yaichi Kawakatsu, Ryohei Sugita, Yuki Utsugi, Koji Okayasu, Moe Mori, Keitaro Tanoi, Yumi Goto, Mayuko Sato, Kiminori Toyooka, Kohki Yoshimoto, Michitaka Notaguchi

    Nature communications   16 ( 1 )   3483 - 3483   2025.4

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    Grafting is an agricultural technique that joins tissues from different plants to obtain useful rootstock traits. However, cellular processes involved in joint tissue repair remain poorly understood. We analyzed Nicotiana benthamiana (Nb) and Arabidopsis thaliana (At) interfamily heterografting as a high-stress model and At homografting as a low-stress model. Transmission electron micrographs reveal the formation of autophagic structures in cells near the graft boundary over a long period in Nb/At interfamily grafts and in a short period of a few days in At homografts. Using a GFP-ATG8 marker line, the autophagosomes were observed in the cells near the graft boundary, especially on the scion side, where nutrient depletion occurred. Grafting of At autophagy-defective mutants decreases grafting success rates and post-grafting growth. NbATG5 knockdown suppresses graft establishment in Nb/At interfamily heterografts. Moreover, At autophagy-defective mutants show reduced callus formation directed to wounds under the nutrient-deficient conditions. These results suggest that autophagy is induced during grafting, promoting callus formation and contributing to tissue connectivity.

    DOI: 10.1038/s41467-025-58519-6

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  • Systemic Regulation of Iron Acquisition by Arabidopsis in Environments with Heterogeneous Iron Distributions Reviewed

    Ryo Tabata, Takehiro Kamiya, Shunpei Imoto, Hana Tamura, Kumiko Ikuta, Michika Tabata, Tasuku Hirayama, Hironaka Tsukagoshi, Keitaro Tanoi, Takamasa Suzuki, Takushi Hachiya, Hitoshi Sakakibara

    Plant & Cell Physiology   63 ( 6 )   842 - 854   2022.6

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1093/pcp/pcac049

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  • Cell-cell adhesion in plant grafting is facilitated by beta-1,4-glucanases Reviewed

    Michitaka Notaguchi, Ken-ichi Kurotani, Yoshikatsu Sato, Ryo Tabata, Yaichi Kawakatsu, Koji Okayasu, Yu Sawai, Ryo Okada, Masashi Asahina, Yasunori Ichihashi, Ken Shirasu, Takamasa Suzuki, Masaki Niwa, Tetsuya Higashiyama

    Science   369 ( 6504 )   698 - 702   2020.8

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1126/science.abc3710

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  • Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition Reviewed

    Yuri Ohkubo, Mina Tanaka, Ryo Tabata, Mari Ogawa-Ohnishi, Yoshikatsu Matsubayashi

    Nature Plants   3 ( 17029 )   2017.3

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    DOI: 10.1038/nplants.2017.29

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  • Long-distance peptide signaling essential for nutrient homeostasis in plants Reviewed

    Satoru Okamoto, Ryo Tabata, Yoshikatsu Matsubayashi

    CURRENT OPINION IN PLANT BIOLOGY   34   35 - 40   2016.12

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  • Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling Reviewed

    Ryo Tabata, Kumiko Sumida, Tomoaki Yoshii, Kentaro Ohyama, Hidefumi Shinohara, Yoshikatsu Matsubayashi

    Science   346 ( 6207 )   343 - 346   2014.10

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1126/science.1257800

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  • 4-2-6 シロイヌナズナの器官間シグナルを介した鉄欠乏応答制御(4-2 植物の微量栄養素 2023年度愛媛大会)

    塩谷 太一, 井本 駿平, 神谷 岳洋, 木羽 隆敏, 榊原 均, 田畑 亮

    日本土壌肥料学会講演要旨集   69   56 - 56   2023.9

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.69.0_56_3

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  • PECT1, a rate-limiting enzyme in phosphatidylethanolamine biosynthesis, is involved in the regulation of stomatal movement in Arabidopsis. Reviewed International journal

    Juntaro Negi, Tomoki Obata, Sakura Nishimura, Boseok Song, Sho Yamagaki, Yuhei Ono, Makoto Okabe, Natsumi Hoshino, Kohei Fukatsu, Ryo Tabata, Katsushi Yamaguchi, Shuji Shigenobu, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Toshinori Kinoshita, Ikuo Nishida, Koh Iba

    The Plant journal : for cell and molecular biology   2023.4

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    An Arabidopsis mutant displaying impaired stomatal responses to CO2 , cdi4, was isolated by a leaf thermal imaging screening. The mutated gene PECT1 encodes CTP:phosphorylethanolamine (PE) cytidylyltransferase. The cdi4 exhibited a decrease in PE levels and a defect in light-induced stomatal opening as well as low CO2 -induced stomatal opening. We created RNAi lines in which PECT1 was specifically repressed in guard cells. These lines are impaired in their stomatal responses to low CO2 concentrations or light. Fungal toxin fusicoccin (FC) promotes stomatal opening by activating plasma membrane H+ -ATPases in guard cells via phosphorylation. Arabidopsis H+ -ATPase1 (AHA1) has been reported to be highly expressed in guard cells and its activation by FC induces stomatal opening. The cdi4 and PECT1 RNAi lines displayed a reduced stomatal opening response to FC. However, similar to in the wild type, cdi4 maintained normal levels of phosphorylation and activation of the stomatal H+ -ATPases after FC treatment. Furthermore, the cdi4 displayed normal localization of GFP-AHA1 fusion protein and normal levels of AHA1 transcripts. Based on these results, we discuss how PECT1 could regulate CO2 - and light-induced stomatal movements in guard cells in a manner that is independent and downstream of the activation of H+ -ATPases.

    DOI: 10.1111/tpj.16245

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  • <i>Nicotiana benthamiana XYLEM CYSTEINE PROTEASE</i> genes facilitate tracheary element formation in interfamily grafting Reviewed

    Chaokun Huang, Ken-ichi Kurotani, Ryo Tabata, Nobutaka Mitsuda, Ryohei Sugita, Keitaro Tanoi, Michitaka Notaguchi

    Horticulture Research   2023.4

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    Publishing type:Research paper (scientific journal)   Publisher:Oxford University Press (OUP)  

    Abstract

    Grafting is a plant propagation technique widely used in agriculture. A recent discovery of the capability of interfamily grafting in Nicotiana has expanded the potential combinations of grafting. In this study, we showed that xylem connection is essential for the achievement of interfamily grafting and investigated the molecular basis of xylem formation at the graft junction. Transcriptome and gene network analyses revealed gene modules for tracheary element (TE) formation during grafting that include genes associated with xylem cell differentiation and immune response. The reliability of the drawn network was validated by examining the role of the Nicotiana benthamiana XYLEM CYSTEINE PROTEASE (NbXCP) genes in TE formation during interfamily grafting. Promoter activities of NbXCP1 and NbXCP2 genes were found in differentiating TE cells in the stem and callus tissues at the graft junction. Analysis of a Nbxcp1;Nbxcp2 loss-of-function mutant indicated that NbXCPs control the timing of de novo TE formation at the graft junction. Moreover, grafts of the NbXCP1 overexpressor increased the scion growth rate as well as the fruit size. Thus, we identified gene modules for TE formation at the graft boundary and demonstrated potential ways to enhance Nicotiana interfamily grafting.

    DOI: 10.1093/hr/uhad072

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  • NAC103 mutation alleviates DNA damage in an Arabidopsis thaliana mutant sensitive to excess boron. Reviewed International journal

    Naoyuki Sotta, Takuya Sakamoto, Takehiro Kamiya, Ryo Tabata, Katsushi Yamaguchi, Shuji Shigenobu, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Toru Fujiwara

    Frontiers in plant science   14   1099816 - 1099816   2023

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    Excess boron (B) is toxic to plants and thereby causes DNA damage and cell death in root meristems. However, the underlying mechanisms which link boron and DNA damage remain unclear. It has been reported that the rpt5a-6 mutant of the 26S proteasome is sensitive to excess boron, resulting in more frequent cell death in root meristem and reduced root elongation. In this study, we showed that a reduction in root growth in the rpt5a mutant in the presence of high boron levels is repressed by a mutation in NAC domain containing transcription factor NAC103, a substrate of the proteasome, which functions in the unfolded protein response pathway. The mutation in NAC103 alleviated excess-B-induced DNA damage and cell death in root meristems of the rpt5a mutant. Superoxide ( O 2 - ) staining with nitroblue tetrazolium revealed that boron stress causes O 2 - accumulation in root tips, which was higher in the rpt5a-6 mutant, whereas the accumulation was lower in the rpt5a-6 nac103-3 double mutant. Our work demonstrates the overall involvement of NAC103 in maintaining healthy root meristem under excess boron conditions in the absence of RPT5A proteasome subunit.

    DOI: 10.3389/fpls.2023.1099816

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  • Regulation of the iron-deficiency response by IMA/FEP peptide. Reviewed International journal

    Ryo Tabata

    Frontiers in plant science   14   1107405 - 1107405   2023

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    Iron (Fe) is an essential micronutrient for plant growth and development, participating in many significant biological processes including photosynthesis, respiration, and nitrogen fixation. Although abundant in the earth's crust, most Fe is oxidized and difficult for plants to absorb under aerobic and alkaline pH conditions. Plants, therefore, have evolved complex means to optimize their Fe-acquisition efficiency. In the past two decades, regulatory networks of transcription factors and ubiquitin ligases have proven to be essential for plant Fe uptake and translocation. Recent studies in Arabidopsis thaliana (Arabidopsis) suggest that in addition to the transcriptional network, IRON MAN/FE-UPTAKE-INDUCING PEPTIDE (IMA/FEP) peptide interacts with a ubiquitin ligase, BRUTUS (BTS)/BTS-LIKE (BTSL). Under Fe-deficient conditions, IMA/FEP peptides compete with IVc subgroup bHLH transcription factors (TFs) to interact with BTS/BTSL. The resulting complex inhibits the degradation of these TFs by BTS/BTSL, which is important for maintaining the Fe-deficiency response in roots. Furthermore, IMA/FEP peptides control systemic Fe signaling. By organ-to-organ communication in Arabidopsis, Fe deficiency in one part of a root drives the upregulation of a high-affinity Fe-uptake system in other root regions surrounded by sufficient levels of Fe. IMA/FEP peptides regulate this compensatory response through Fe-deficiency-triggered organ-to-organ communication. This mini-review summarizes recent advances in understanding how IMA/FEP peptides function in the intracellular signaling of the Fe-deficiency response and systemic Fe signaling to regulate Fe acquisition.

    DOI: 10.3389/fpls.2023.1107405

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  • 4-2-4 シロイヌナズナIMA/FEPを介した器官間シグナルによる鉄吸収制御(4-2 植物の微量栄養素 2022年度東京大会)

    田畑 亮, 神谷 岳洋, 井本 駿平, 木羽 隆敏, 榊原 均

    日本土壌肥料学会講演要旨集   68   46 - 46   2022.9

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.68.0_46_1

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  • Analysis of plasmodesmata permeability using cultured tobacco BY-2 cells entrapped in microfluidic chips. Reviewed

    Ken-Ichi Kurotani, Yaichi Kawakatsu, Masahiro Kikkawa, Ryo Tabata, Daisuke Kurihara, Hiroyuki Honda, Kazunori Shimizu, Michitaka Notaguchi

    Journal of Plant Research   2022.7

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    Plasmodesmata are unique channel structures in plants that link the fluid cytoplasm between adjacent cells. Plants have evolved these microchannels to allow trafficking of nutritious substances as well as regulatory factors for intercellular communication. However, tracking the behavior of plasmodesmata in real time is difficult because they are located inside tissues. Hence, a system was constructed to monitor the movement of substances by plasmodesmata using tobacco BY-2 cells, which are linearly organized cells, and a microfluidic device that traps them in place and facilitates observation. After targeting one cell for photobleaching, recovery of the lost H2B-GFP protein was detected within 200 min. No recovery was detected in that time frame by photobleaching the entire cell filaments. This suggested that the recovery of H2B-GFP protein was not due to de novo protein synthesis, but rather to translocation from neighboring cells. The transport of H2B-GFP protein was not observed when sodium chloride, a compound known to cause plasmodesmata closure, was present in the microfluid channel. Thus, using the microfluidic device and BY-2 cells, it was confirmed that the behavior of plasmodesmata could be observed in real time under controllable conditions.

    DOI: 10.1007/s10265-022-01406-8

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  • Regulation of ammonium acquisition and use in Oryza longistaminata ramets under nitrogen source heterogeneity Reviewed

    Misato Kawai, Ryo Tabata, Miwa Ohashi, Haruno Honda, Takehiro Kamiya, Mikiko Kojima, Yumiko Takebayashi, Shunsuke Oishi, Satoru Okamoto, Takushi Hachiya, Hitoshi Sakakibara

    PLANT PHYSIOLOGY   188 ( 4 )   2364 - 2376   2022.3

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    DOI: 10.1093/plphys/kiac025

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  • Development of microfluidic chip for entrapping tobacco BY-2 cells Reviewed

    Kazunori Shimizu, Yaichi Kawakatsu, Ken-Ichi Kurotani, Masahiro Kikkawa, Ryo Tabata, Daisuke Kurihara, Hiroyuki Honda, Michitaka Notaguchi

    PLOS ONE   17 ( 4 )   2022

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    DOI: 10.1371/journal.pone.0266982

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  • 4-2-8 シロイヌナズナにおける器官間シグナル伝達を介した鉄吸収制御(4-2 植物の微量栄養素 2021年度北海道大会)

    田畑 亮, 井本 駿平, 田村 花, 神谷 岳洋, 木羽 隆敏, 榊原 均

    日本土壌肥料学会講演要旨集   67   61 - 61   2021.9

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.67.0_61_2

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  • 4-2-11 鉄欠乏に応答した器官間シグナル制御因子の探索(4-2 植物の微量栄養素 2020年度岡山大会)

    井本 駿平, 田村 花, 菅野 茂夫, 神谷 岳洋, 木羽 隆敏, 榊原 均, 田畑 亮

    日本土壌肥料学会講演要旨集   66   55 - 55   2020.9

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.66.0_55_2

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  • Micrografting device for testing systemic signaling in Arabidopsis Reviewed

    Hiroki Tsutsui, Naoki Yanagisawa, Yaichi Kawakatsu, Shuka Ikematsu, Yu Sawai, Ryo Tabata, Hideyuki Arata, Tetsuya Higashiyama, Michitaka Notaguchi

    PLANT JOURNAL   103 ( 2 )   918 - 929   2020.7

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/tpj.14768

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  • Callose Synthesis Suppresses Cell Death Induced by Low-Calcium Conditions in Leaves(1) Reviewed

    Yusuke Shikanai, Ryosuke Yoshida, Tomoko Hirano, Yusuke Enomoto, Baohai Li, Mayu Asada, Mutsumi Yamagami, Katsushi Yamaguchi, Shuji Shigenobu, Ryo Tabata, Shinichiro Sawa, Hiroki Okada, Yoshikazu Ohya, Takehiro Kamiya, Toru Fujiwara

    PLANT PHYSIOLOGY   182 ( 4 )   2199 - 2212   2020.4

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    DOI: 10.1104/pp.19.00784

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  • Autophagy is induced during plant grafting for wound healing

    Ken-ichi Kurotani, Ryo Tabata, Yaichi Kawakatsu, Ryohei Sugita, Koji Okayasu, Keitaro Tanoi, Michitaka Notaguchi

    2020.2

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    Publisher:Cold Spring Harbor Laboratory  

    Summary

    Grafting is an important technique in agriculture to obtain several good traits such as high disease tolerance and high yield by exchanging root system. However, the underlined cellular processes to compensate the wound damage and repair tissues were largely unknown.

    We analyzed two graft combinations: Nicotiana benthamiana (Nb) homograft as a compatible, wound repairing model and Nb heterograft with Arabidopsis thaliana (At) as an incompatible and more stressful model, which we recently identified as an exceptional maintainable interfamily grafting.

    In both graft combinations, nutrient loss was observed in gene expression after grafting, where the level of nutrient loss was more sever in heterografts. Transmission electron micrographs of Nb/At heterografts suggested that microautophagy was induced in cells near the graft boundary. In At seedling micrografting, the fluorescence of autophagy protein marker GFP-ATG8 was highly observed at graft junction especially in cambial region. In At atg2 mutant homografts, growth after grafting decreased compared with wild-type homografts. Moreover, when NbATG5 knocked-down Nb scion was grafted to At stock, the successful rate of grafting was significantly decreased.

    Altogether, these results suggest that component of autophagy is induced during grafting and has a role in wound healing.

    DOI: 10.1101/2020.02.14.949453

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  • Ideal agriculture: Basic research and field technology supporting sustainable and innovative crop production

    Senoo Keishi, Fuji Masako, Utami Yuniar Devi, Shimizu Yukiko, Saijo Yusuke, Ohmori Yoshihiro, Fujiwara Toru, Shiratori Yutaka, Ota Sayuri, Masuda Yoko, Itoh Hideomi, Notaguchi Michitaka, Tabata Ryo, Okayasu Koji, Sawai Yu, Suzuki Takamasa, Kurotani Ken-ichi

    Japanese Journal of Soil Science and Plant Nutrition   91 ( 2 )   94 - 98   2020

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    Language:Japanese   Publisher:Japanese Society of Soil Science and Plant Nutrition  

    DOI: 10.20710/dojo.91.2_94

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  • Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha Reviewed

    Yuki Hirakawa, Naoyuki Uchida, Yasuka L. Yamaguchi, Ryo Tabata, Sakiko Ishida, Kimitsune Ishizaki, Ryuichi Nishihama, Takayuki Kohchi, Shinichiro Sawa, John L. Bowman

    PLOS GENETICS   15(3) ( e1007997 )   2019.3

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    DOI: 10.1371/journal.pgen.1007997

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  • Polyamine Resistance Is Increased by Mutations in a Nitrate Transporter Gene NRT1.3 (AtNPF6.4) in Arabidopsis thaliana Reviewed

    Wurina Tong, Akihiro Imai, Ryo Tabata, Shuji Shigenobu, Katsushi Yamaguchi, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Hiroyasu Motose, Taku Takahashi

    FRONTIERS IN PLANT SCIENCE   7   2016.6

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    DOI: 10.3389/fpls.2016.00834

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  • BAM 1 and RECEPTOR-LIKE PROTEIN KINASE 2 constitute a signaling pathway and modulate CLE peptide-triggered growth inhibition in Arabidopsis root Reviewed

    Noriko Shimizu, Takashi Ishida, Masashi Yamada, Shuji Shigenobu, Ryo Tabata, Atsuko Kinoshita, Katsushi Yamaguchi, Mitsuyasu Hasebe, Kanako Mitsumasu, Shinichiro Sawa

    NEW PHYTOLOGIST   208 ( 4 )   1104 - 1113   2015.12

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    DOI: 10.1111/nph.13520

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  • BEACH-Domain Proteins Act Together in a Cascade to Mediate Vacuolar Protein Trafficking and Disease Resistance in Arabidopsis Reviewed

    Ooi-kock Teh, Noriyuki Hatsugai, Kentaro Tamura, Kentaro Fuji, Ryo Tabata, Katsushi Yamaguchi, Shuji Shingenobu, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Tomoo Shimada, Ikuko Hara-Nishimura

    MOLECULAR PLANT   8 ( 3 )   389 - 398   2015.3

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    DOI: 10.1016/j.molp.2014.11.015

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  • A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem Reviewed

    Atsuko Kinoshita, Colette A. ten Hove, Ryo Tabata, Masashi Yamada, Noriko Shimizu, Takashi Ishida, Katsushi Yamaguchi, Shuji Shigenobu, Yumiko Takebayashi, Satoshi Iuchi, Masatomo Kobayashi, Tetsuya Kurata, Takuji Wada, Mitsunori Seo, Mitsuyasu Hasebe, Ikram Blilou, Hiroo Fukuda, Ben Scheres, Renze Heidstra, Yuji Kamiya, Shinichiro Sawa

    DEVELOPMENT   142 ( 3 )   444 - 453   2015.2

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1242/dev.113167

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  • Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis Reviewed

    Takashi Ishida, Ryo Tabata, Masashi Yamada, Mitsuhiro Aida, Kanako Mitsumasu, Masayuki Fujiwara, Katsushi Yamaguchi, Shuji Shigenobu, Masayuki Higuchi, Hiroyuki Tsuji, Ko Shimamoto, Mitsuyasu Hasebe, Hiroo Fukuda, Shinichiro Sawa

    EMBO Reports   15 ( 11 )   1202 - 1209   2014.11

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.15252/embr.201438660

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  • Maturation processes and structures of small secreted peptides in plants Reviewed

    Ryo Tabata, Shinichiro Sawa

    FRONTIERS IN PLANT SCIENCE   5   2014.7

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    DOI: 10.3389/fpls.2014.00311

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  • Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1 Reviewed

    Ken-ichi Kosami, Izuru Ohki, Kokoro Hayashi, Ryo Tabata, Sayaka Usugi, Tsutomu Kawasaki, Toshimichi Fujiwara, Atsushi Nakagawa, Ko Shimamoto, Chojiro Kojima

    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS   70   113 - 115   2014.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1107/S2053230X13033645

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  • P4-2-3 転写因子NAC103の変異がホウ素過剰障害におけるDNA損傷を軽減する(ポスター,4-2 植物の微量栄養素,2014年度東京大会)

    反田 直之, 坂本 卓也, 神谷 岳洋, 澤 進一郎, 田畑 亮, 山田 建志, 長谷部 光泰, 重信 秀治, 山口 勝司, 藤原 徹

    日本土壌肥料学会講演要旨集   60   65   2014

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.60.0_65_2

    CiNii Research

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  • Evolutionarily conserved CLE peptide signaling in plant development, symbiosis, and parasitism. Reviewed International journal

    Kaori Miyawaki, Ryo Tabata, Shinichiro Sawa

    Current opinion in plant biology   16 ( 5 )   598 - 606   2013.10

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    Small polypeptides are widely used as signaling molecules in cell-to-cell communication in animals and plants. The CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) gene family is composed of numerous genes that contain conserved CLE domains in various plant species and plant-parasitic nematodes. Here, we review recent progress in our understanding of CLE signaling during stem cell maintenance in Arabidopsis and grasses. We also summarize the roles of CLE signaling in the legume-Rhizobium symbiosis and infection by plant-parasitic nematodes. CLE signaling is important for diverse aspects of cell-to-cell signaling and long-distance communication, which are critical for survival, and the basic components of the CLE signaling pathway are evolutionarily conserved in both plants and animals.

    DOI: 10.1016/j.pbi.2013.08.008

    PubMed

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  • Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis Reviewed

    Ryo Tabata, Takehiro Kamiya, Shuji Shigenobu, Katsushi Yamaguchi, Masashi Yamada, Mitsuyasu Hasebe, Toru Fujiwara, Shinichiro Sawa

    PLANT SIGNALING & BEHAVIOR   8 ( 1 )   2013

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    DOI: 10.4161/psb.22534

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  • P10-16 19SプロテアソームサブユニットRPT5a欠損によるシロイヌナズナのホウ素感受性の遺伝学的解析(10.植物の微量栄養素,2012年度鳥取大会)

    反田 直之, 坂本 卓也, 神谷 岳洋, 澤 進一郎, 田畑 亮, 山田 昌史, 長谷部 光泰, 重信 秀治, 山口 勝司, 藤原 徹

    日本土壌肥料学会講演要旨集   58   72   2012

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    Language:Japanese   Publisher:一般社団法人 日本土壌肥料学会  

    DOI: 10.20710/dohikouen.58.0_72_1

    CiNii Research

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  • Diverse roles of CLE peptides in plant development and environmental response.

    Tabata ,R, Sawa , S

    Current Topics in Plant Biology   2011

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  • RPK2 functions in diverged CLE signaling Reviewed

    Shinichiro Sawa, Ryo Tabata

    PLANT SIGNALING & BEHAVIOR   6 ( 1 )   86 - 88   2011

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    DOI: 10.4161/psb.6.1.14128

    Web of Science

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  • Arabidopsis AUXIN RESPONSE FACTOR6 and 8 Regulate Jasmonic Acid Biosynthesis and Floral Organ Development via Repression of Class 1 KNOX Genes Reviewed

    Ryo Tabata, Masaya Ikezaki, Takahiro Fujibe, Mitsuhiro Aida, Chang-en Tian, Yoshihisa Ueno, Kotaro T. Yamamoto, Yasunori Machida, Kenzo Nakamura, Sumie Ishiguro

    Plant & Cell Physiology   51 ( 1 )   164 - 175   2010.1

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    DOI: 10.1093/pcp/pcp176

    Web of Science

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  • Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension Reviewed

    Hann Ling Wong, Reinhard Pinontoan, Kokoro Hayashi, Ryo Tabata, Takashi Yaeno, Kana Hasegawa, Chojiro Kojima, Hirofumi Yoshioka, Koh Iba, Tsutomu Kawasaki, Ko Shimamoto

    PLANT CELL   19 ( 12 )   4022 - 4034   2007.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1105/tpc.107.055624

    Web of Science

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  • Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in Transgenic analysis of plants Reviewed

    Tsuyoshi Nakagawa, Takarnasa Suzuki, Satoko Murata, Shinya Nakamura, Takeshi Hino, Kenichiro Maeo, Ryo Tabata, Tsutae Kawai, Katsunori Tanaka, Yasuo Niwa, Yuichiro Watanabe, Kenzo Nakamura, Tetsuya Kimura, Sumie Ishiguro

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   71 ( 8 )   2095 - 2100   2007.8

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1271/bbb.70216

    Web of Science

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MISC

  • Functional analysis of the cysteine-rich peptide involved in the environmental stress response

    丹羽智子, 丹羽智子, 後藤綾乃, 和久茉厘那, 神谷岳洋, 大石俊輔, 水多陽子, 水多陽子, 筒井大貴, 三輪京子, 永野惇, 永野惇, 東山哲也, 木羽隆敏, 榊原均, 田畑亮

    日本植物生理学会年会(Web)   66th   2025

  • 接木は組織修復においてオートファジーを誘導する

    黒谷賢一, 篠崎大樹, 篠崎大樹, 田畑亮, 川勝弥一, 杉田亮平, 杉田亮平, 岡田健太郎, 宇津木優樹, 岡安浩次, 森萌, 田野井慶太朗, 吉本光希, 野田口理孝, 野田口理孝, 野田口理孝, 野田口理孝

    日本植物学会大会研究発表記録(CD-ROM)   88th   2024

  • シロイヌナズナの器官間シグナルを介した鉄欠乏応答制御

    塩谷太一, 井本駿平, 神谷岳洋, 木羽隆敏, 榊原均, 田畑亮

    日本土壌肥料学会講演要旨集(Web)   69   2023

  • シロイヌナズナIMA/FEPを介した器官間シグナルによる鉄吸収制御

    田畑亮, 神谷岳洋, 井本駿平, 木羽隆敏, 榊原均

    日本土壌肥料学会講演要旨集(Web)   68   2022

  • CLE-CLV1は長距離シグナルを介して線虫感染を制御する

    中上知, 江島千佳, NGAN Bui Thi, 佐藤博, 田畑亮, 野田口理孝, 岡本暁, 石田喬志, 澤進一郎

    Nematological Research   48 ( 2 )   2018

  • 植物の生長調節 根の窒素吸収を制御する長距離移行ペプチド群

    田畑亮, 大久保祐里, 松林嘉克

    植物の生長調節   53 ( 2 )   2018

  • Heterotrimeric G proteinsはCLAVATAシグナル伝達経路と協調的に機能し茎頂分裂組織の制御を行う

    石田喬志, 田畑亮, 山田昌史, 山田昌史, 相田光宏, 光増可奈子, 樋口雅之, 辻寛之, 島本功, 澤進一郎

    日本植物学会大会研究発表記録   78th   2014

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Presentations

  • 生命金属「鉄」動態を制御する植物の器官間シグナル伝達機構

    田畑 亮

    2020年度 日本植物生理学会年会(松江)シンポジウム「生命金属科学の新展開」  2020.3 

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  • 鉄欠乏に応答した長距離シグナル制御

    田畑亮, 生田久美子, 田村花, 神谷岳洋, 田野井慶太郎, 松林嘉克, 榊原均

    2019年度 日本植物生理学会年会(名古屋)  2019.3 

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  • 葉から根へ移行するポリペプチドによる窒素吸収の長距離制御

    大久保祐里, 田中美名, 田畑亮, 小川(大西)真里, 松林嘉克

    2017年度 日本植物生理学会年会(鹿児島)  2017.3 

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  • 鉄欠乏に応答した根-葉-根間の長距離シグナル伝達機構解析

    生田久美子, 蜂谷卓士, 榊原均, 田畑亮

    2017年度 日本植物生理学会年会(鹿児島)  2017.3 

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Awards

  • 令和7年度 第10回 植物の栄養研究会 九州大学 最優秀ポスター賞

    2025.12  

    大河原 夏菜, 綾野 里咲, Yuniar Devi Utami, 晝間 敬, 田畑 亮

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  • 令和4年度 植物の栄養研究会 東京大会 ポスター賞

    2022.12  

    塩谷 太一, 井本 駿平, 神谷 岳洋, 木羽 隆敏, 榊原 均, 田畑 亮

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  • 令和元年度 植物の栄養研究会 広島大会 ポスター賞

    2019.9  

    田村 花, 神谷 岳洋, 榊原 均, 田畑 亮

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  • 平成29年度科学技術分野 文部科学大臣表彰 若手科学者賞

    2017.4  

    田畑 亮

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  • Bioscience, Biotechnology, and Biochemistry (B. B. B.)論文賞 日本農芸化学会

    2008.3  

    中川 強, 鈴木 孝征, 村田 聡子, 中村 真也, 日野 武志, 前尾 健一郎, 田畑 亮, 河合 都妙, 田中 克則, 丹羽 康夫, 渡邊 雄一郎, 中村 研三, 木村 哲哉, 石黒澄衞

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Research Projects

  • 環境ストレス応答を制御する植物の中分子ペプチド探索と高機能性ペプチドデザイン

    Grant number:24K21849  2024.6 - 2027.3

    日本学術振興会  科学研究費助成事業  挑戦的研究(萌芽)

    田畑 亮

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    Grant amount:\6500000 ( Direct Cost: \5000000 、 Indirect Cost:\1500000 )

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  • 器官間コミュニケーションを介した植物の鉄欠乏ストレス適応戦略の解明

    Grant number:23K26805  2024.4 - 2027.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    田畑 亮

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    Grant amount:\12220000 ( Direct Cost: \9400000 、 Indirect Cost:\2820000 )

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  • 器官間コミュニケーションを介した植物の鉄欠乏ストレス適応戦略の解明

    Grant number:23H02112  2023.4 - 2027.3

    日本学術振興会  科学研究費助成事業 基盤研究(B)  基盤研究(B)

    田畑 亮

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    Grant amount:\18720000 ( Direct Cost: \14400000 、 Indirect Cost:\4320000 )

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  • 不均一土壌環境における植物の長距離シグナルを介した鉄獲得戦略

    Grant number:23H04198  2023.4 - 2025.3

    日本学術振興会  科学研究費助成事業  学術変革領域研究(A)

    田畑 亮

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    Grant amount:\7800000 ( Direct Cost: \6000000 、 Indirect Cost:\1800000 )

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  • Adaptation of plants to nutrient deficiencies through the establishment of a plant-microbe holobiont

    Grant number:21H05150  2021.8 - 2024.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Transformative Research Areas (B)

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    Grant amount:\49400000 ( Direct Cost: \38000000 、 Indirect Cost:\11400000 )

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  • 化学・ゲノム科学的手法による植物の新規ペプチドシグナリング解明

    Grant number:21K19074  2021.7 - 2024.3

    日本学術振興会  科学研究費助成事業 挑戦的研究(萌芽)  挑戦的研究(萌芽)

    田畑 亮

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    Grant amount:\6500000 ( Direct Cost: \5000000 、 Indirect Cost:\1500000 )

    近年植物は、低分子化合物(オーキシンやサイトカイニン等)のみならず、ペプチド分子による器官間シグナル伝達機構を介して個体のホメオスタシスを維持している事が明らかになってきた。しかしながら、ゲノム情報より、植物は約1000 個の分泌型ペプチド遺伝子を保持している事が予想されているが、機能解明された因子は全体のわずか数%にも満たない。植物が持つ機能未知の分泌型ペプチドの中には、環境ストレス応答における器官間シグナル伝達に必須の因子が、さらに多数存在しているのではないかと期待されている。そこで本研究では、環境ストレスに応答した器官間シグナル伝達機構と、それを支える器官間移動性のペプチド分子に着目して、化学的・ゲノム科学の研究アプローチによって、ストレス応答に必須の新規ペプチド分子探索に挑戦する。
    これまで、トマトより採集した維管束液からタンパク質抽出を行い、nano LC-MS によるペプチドミクス解析を行うことで、複数のトマト硫酸化ペプチドを同定した。また、シロイヌナズナを用いたDNA修復因子の変異体背景でCRISPR/Cas9のゲノム編集技術を用いる手法(Tandem cluster破壊法)によって、ゲノムに大きな欠失を引き起こすことで、鉄欠乏によって誘導されるCysteine-rich peptideを見出した。このCRP tandem破壊株は、野生型と比較して生育が阻害されてたため、発生や環境ストレス応答などのペプチドシグナリングに重要な役割を持っていることが推測された。

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  • 生命金属動態を制御する植物の器官間シグナル伝達機構解明

    Grant number:20H05501  2020.4 - 2022.3

    日本学術振興会  科学研究費助成事業 新学術領域研究(研究領域提案型)  新学術領域研究(研究領域提案型)

    田畑 亮

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    Grant amount:\5720000 ( Direct Cost: \4400000 、 Indirect Cost:\1320000 )

    植物は、土壌中の根の一部が局所的な鉄欠乏におちいったとき、周りに十分な鉄が存在する根にその情報を伝え、鉄吸収を相補的に促進させることで、個体全体の鉄含量を一定に保つ巧みなシステムを持つ。しかしながら、その器官間コミュニケーションを制御する分子実態はこれまで明らかにされていなかった。そこで、不均一な土壌環境を模倣したSplit-root培養法を用いたトランスクリプトーム解析から、生命鉄動態を制御する器官間移動性分子を探索し、機能解析することを目的とした。
    シロイヌナズナを用いたSplit-root鉄欠乏処理実験では、一部の根が鉄欠乏条件下に晒されると、他方の根において鉄イオントランスポーター(IRT1)の発現量が相補的に増加する。これまで、シロイヌナズナSplit-root鉄欠乏培養法を用いた時系列トランスクリプトーム解析から、葉から根へ移動して鉄吸収を活性化する器官間移動性の候補分子として「鉄結合タンパク質(IRON MAN; IMA/FEP)」を同定してきた。IMA多重変異体では、Split-root鉄欠乏処理時において、IRT1の相補的な発現量上昇は全く起こらなかった。また、シロイヌナズナ接ぎ木実験の結果から、IMAは地上部で発現誘導されることで、地下部(根)の正常な発達やIRT1および、シデロフォア合成(クマリン合成)系の遺伝子発現を制御していることが明らかになった。つまり、IMAが生命鉄動態を制御する、葉から根への器官間を移動して機能するシグナル分子である可能性が強く示唆された(Tabata et al., Plant Cell Physiol., 2022)。

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  • Analysis of root-to-shoot-to-root communication pathway in response to iron deficiency

    Grant number:18K05373  2018.4 - 2022.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Tabata Ryo

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    Grant amount:\4420000 ( Direct Cost: \3400000 、 Indirect Cost:\1020000 )

    Plants have a systemic mechanism by which local iron (Fe) starvation on one side of the root leads to a compensatory and increased Fe uptake on the other root exposed to the Fe-rich patch. However, the molecular mechanisms that control this organ-to-organ communication have not been clarified. In this study, we identified IRON MAN (IMA/FEP) as a candidate molecule that moves from leaf to root and activates Fe uptake as a mobile signaling molecule based on time-series transcriptome analysis using a split-root culture that mimics a heterogeneous soil environment. Grafting experiments also supported that IMA acts as a shoot-derived descending signal that upregulates Fe transporter genes in the roots.

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  • The exploration of regulators for the long-distance signaling in response to phosphate-starvation

    Grant number:16K18567  2016.4 - 2018.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    Tabata Ryo, KAMIYA Takehiro

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    Grant amount:\2470000 ( Direct Cost: \1900000 、 Indirect Cost:\570000 )

    The results of split-root culture indicated that, when some roots recognize Phosphate or Fe-starvation, a long-distance signaling is initiated in the portion of the root directly experiencing Phosphate or Fe-starvation. Then, this information transmit to another roots through “root-to-shoot-to-root” pathway. A series of genes that involved in Phosphate or Fe uptake and metabolism are concomitantly induced on the other side of the roots to compensate for the local Phosphate or Fe-deficiency.
    We also identified several mobile signal candidates for long-distance signaling in response to Phosphate or Fe-starvation through the transcriptome analysis and proteome analysis using the xylem sap of Tomato.

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