Updated on 2026/03/07

写真a

 
SHINYA RYOJI
 
Organization
Undergraduate School School of Agriculture Associate Professor
Title
Associate Professor
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Degree

  • Ph.D ( 2012.3   Kyoto University )

Research Interests

  • 進化発生生物学

  • 植物保護学

  • 線虫学

  • 極限環境生物学

Research Areas

  • Environmental science/Agricultural science / Conservation science (plants)

  • Environmental science/Agricultural science / Entomology

  • Environmental science/Agricultural science / Environmental agriculture

  • Life sciences / Animals: biochemistry, physiology, behavioral science

  • Life sciences / Evolutionary biology

  • Life sciences / Forest science

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Research History

  • Meiji University   School of Agriculture   Associate Professor

    2021.4

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  • 科学技術振興機構さきがけ

    2017.10 - 2021.9

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  • 明治大学農学部 専任講師

    2017.4 - 2021.3

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  • 博士研究員(カリフォルニア工科大学)

    2017.1 - 2017.3

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  • 日本学術振興会海外特別研究員(カリフォルニア工科大学)

    2015.1 - 2016.12

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  • 日本学術振興会特別研究員 SPD (中部大学・カリフォルニア工科大学)

    2012.4 - 2014.12

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  • 日本学術振興会特別研究員 DC1 (京都大学)

    2009.4 - 2012.3

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Professional Memberships

  • JAPANESE SOCIETY OF APPLIED ENTOMOLOGY AND ZOOLOGY

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  • THE JAPANESE NEMATOLOGICAL SOCIETY

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Papers

  • Cyclohexyl acetate functions like a volatile sex pheromone mimic in Caenorhabditis nematodes. International journal

    Xuan Wan, Yuki Togawa, Matthew R Gronquist, Marika Sagawa, Daniel Leighton, Chung Man Chan, Frank C Schroeder, King L Chow, Paul W Sternberg, Ryoji Shinya

    BMC biology   24 ( 1 )   34 - 34   2026.1

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Cold Spring Harbor Laboratory  

    Abstract

    Nematodes communicate via diverse sex pheromones, including long-range volatile signals, short-range chemical cues, and contact-dependent molecules. While the ascaroside family of small molecules that mediate short-range attraction is well characterized, the identities and roles of volatile sex pheromones (VSPs) that act over longer ranges remain unknown. Using GC-MS analysis of crude VSP extracts, we identified cyclohexyl acetate (CA) as a candidate mimic, sharing retention time and mass spectral features with natural VSPs. Behavioral assays demonstrated that CA acts as a concentration-dependent, male-specific attractant in Caenorhabditis. Pre-exposure to VSPs induced cross-adaptation to CA, suggesting shared sensory processing. Surprisingly, genetic and calcium imaging analyses revealed that CA perception is mediated primarily by AWC<sub>on</sub> (str-2-expressing) neurons and involves VSPs chemoreceptor srd-1-independent pathways, which are distinct from the neural pathways involved in natural VSPs perception. These findings establish that CA is not a major component of VSPs but a structural and functional mimic of nematode VSPs, operating through a parallel sensory circuit. Although the endogenous source of CA remains unknown, its structural and behavioral mimicry provides new insights into the complexity of chemosensory signaling and the potential for interspecies chemical eavesdropping in nematode ecology.

    DOI: 10.1186/s12915-026-02510-0

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  • O-acyltransferase genes involved in the production of volatile sex pheromones in <i> <i>Caenorhabditis elegans</i> </i> Reviewed

    Xuan Wan, Sarah M. Cohen, Yan Yu, Henry Hoan Le, Heenam Park, Alessandro Groaz, Rachel Moreno, Minyi Tan, Jessica Schneider, Matthew R. Gronquist, Ryoji Shinya, Frank C. Schroeder, Paul W. Sternberg

    Proceedings of the National Academy of Sciences   123 ( 2 )   2026.1

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    Publishing type:Research paper (scientific journal)   Publisher:Proceedings of the National Academy of Sciences  

    Gene family expansions are critical for functional diversification, yet the contributions of paralogs to metabolic pathways are often unclear. In Caenorhabditis , the expanded O-acyltransferase (OAC) family—enzymes that transfer acyl groups to hydroxylated substrates—remains poorly characterized despite having been implicated in lipid metabolism. Using CRISPR-Cas9 mutagenesis, behavioral assays, gas chromatographic-mass spectral (GC-MS) analyses, and metabolomics, we systematically analyzed 59 OAC-family protein-coding genes to define their roles in regulating signaling molecules. We found that four adjacent paralogs ( oac-13, oac-16, oac-25, and oac-28 ) on chromosome I are required for synthesizing volatile sex pheromones—airborne signals critical for male mate-searching. Specifically, oac -13 and oac-16 are necessary for producing both major pheromone components, while the identical tandem paralogs oac-25 and oac-28 regulate the production of the later-eluting component in gas chromatography. Disruption of these genes reduced production of key pheromone components and impaired male attraction. Metabolomics revealed that oac-16 and other OACs also modulate the synthesis and secretion of nonvolatile ascaroside pheromones, indicating dual roles in chemical signaling. This work uncovers functional specialization within an expanded gene family, illustrating how redundancy and divergence enable adaptive evolution of communication systems.

    DOI: 10.1073/pnas.2524778123

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  • Ultrastructural Description of Amphid Neurons in the Pine Wood Nematode Indicates Concurrent Evolution of the Stylet and Specific Neurons Reviewed

    Taisuke Ekino, Ryoji Shinya

    Journal of Comparative Neurology   533 ( 11 )   2025.11

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Wiley  

    ABSTRACT

    Understanding how animals perceive environmental stimuli is essential for reconstructing the evolution of their sensory systems. Nematodes provide a useful model for studying sensory adaptation due to their relatively simple nervous systems and broad ecological diversity. The amphid, the primary sensory organ in nematodes, has been well characterized in Caenorhabditis elegans and other bacterivorous species. However, comparatively little is known about amphid structures in nematodes with different ecological niches.​ In this study, we performed serial section transmission electron microscopy and three‐dimensional reconstruction of amphid neurons in Bursaphelenchus xylophilus , a fungal‐feeding, plant‐parasitic nematode. We identified 13 amphid neurons, five of which showed a distinct morphology and are designated as type V neurons.These neurons were previously described as outer accessory cilia in other stylet‐bearing nematodes, and had not been observed in bacterivorous species. Type V neurons exhibited trifurcated cilia that extended toward each lip and were structurally reminiscent of mechanosensory neurons.​ The presence of type V neurons only in stylet‐bearing nematodes is consistent with the hypothesis that these neurons may have evolved in association with the stylet. Their trifurcated cilia suggest a potential role in detecting mechanical cues during lip contact with substrates, which could trigger stylet ejection. Alternatively, they may also contribute to other sensory modalities. Our findings reveal that fungal‐feeding plant‐parasitic nematodes possess amphid sensory architectures that differ markedly from those of bacterivorous species.

    DOI: 10.1002/cne.70114

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  • Discovery of a novel Cardinium endosymbiont in the free-living nematode Aphelenchus avenae Reviewed

    Kanata Ichiishi, Taisei Kikuchi, Ryoji Shinya

    Nematological Research (Japanese Journal of Nematology)   2025.11

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:The Japanese Nematological Society  

    DOI: 10.3725/jjn.55.3

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  • A male-derived volatile sex pheromone in &lt;Caenorhabditis&gt; nematodes identified through its mimicry by a predator

    Matthew R. Gronquist, Xuan Wan, Daniel Leighton, Yuki Togawa, Marika Sagawa, Paul W Sternberg, Frank C Schroeder, Ryoji Shinya

    bioRxiv   2025.9

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    Authorship:Corresponding author   Publisher:Cold Spring Harbor Laboratory  

    Recent studies demonstrated that the predacious fungi Arthrobotrys oligospora emits a mixture of volatile chemical cues that function to attract nematode prey. The strong attraction elicited by one of the mixture components, methyl 3-methyl-2-butenoate (MMB), was highly female- and hermaphrodite-specific within several Caenorhabditis species, including C. remanei and C. elegans, suggesting that MMB might function as a mimic of an endogenous, male-produced, volatile sex pheromone (VSP) within these species. Here, we report evidence that MMB is produced by C. remanei males at levels that are attractive to C. remanei females and C. elegans hermaphrodites. Notably, MMB production was not detected for C. elegans males; a finding which correlates with behavioral assays for which worm-conditioned media (WCM) prepared from C. remanei, but not from C. elegans adult males is strongly attractive to both C. remanei females and C. elegans hermaphrodites. Our findings establish MMB as the first chemically identified VSP in nematodes and show that A. oligospora exploits a dual strategy of chemical deception—mimicry and eavesdropping—to enhance prey capture.

    DOI: 10.1101/2025.09.12.675966

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  • Living Environment and Basic Features of the Nematodes Associated with Dung Beetle <i>Onthophagus atripennis</i> Reviewed

    Yuya Ikeda, Natsumi Kanzaki, Ryoji Shinya

    Journal of Nematology   57 ( 1 )   2025.8

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Walter de Gruyter GmbH  

    Abstract

    Viviparity is a very rare reproductive mode in nematodes, having been documented in only six species. Five of these species have been isolated among the dung beetles Onthophagus, suggesting that studying the environments associated with dung beetles may help shed light on why viviparity evolved in these particular species. Onthophagus atripennis is often closely associated with the viviparous nematode Tokorhabditis atripennis, as well as some other oviparous nematodes. Hence, the system involving T. atripennis and dung beetles could provide valuable insights into the adaptive significance of viviparity in nematodes. To explore this idea, it is essential to first gain a better understanding of the natural habitats of T. atripennis, which remain poorly understood. Therefore, we investigated the nematode communities associated with O. atripennis and identified potential habitats for T. atripennis in environments used by dung beetles. Nematodes associated with O. atripennis and those inhabiting its rearing cases were isolated from samples. Two Tokorhabditis species were isolated from the rearing cases of O. atripennis, suggesting that they inhabit environments used by O. atripennis. Regarding other oviparous nematodes, some appeared to have relatively strong associations with dung beetles, but more detailed studies are needed to confirm their specific habitats. Although further investigations are necessary, the fact that nematodes, including viviparous species, were isolated from environments used by dung beetles provides important information about the potential competitors or predators of T. atripennis in such environments.

    DOI: 10.2478/jofnem-2025-0035

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  • Sugar availability influences sex determination in the root-knot nematode, Meloidogyne incognita, via changes in giant cell development Reviewed

    Kosuke Manabe, Atsushi Miyama, Shinichiro Sawa, Ryoji Shinya

    Nematology   2025.8

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  • Microparticle Bombardment as a Method for Transgenesis in Auanema and Tokorhabditis. Reviewed International journal

    Tatsuya Yamashita, Andre Pires-daSilva, Shun Oomura, Taichi Kusano, Nami Haruta, Mayu Hasumi, Taisei Kikuchi, Sally Adams, Asako Sugimoto, Ryoji Shinya

    microPublication biology   2025   2025.5

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    Functional gene analysis tools in Caenorhabditis elegans are often ineffective in other nematodes due to differences in gonadal morphology and transgene silencing. Here, we established a method to generate stable transgenic lines in the nematodes Auanema freiburgense and Tokorhabditis tufae using microparticle bombardment coupled with hygromycin B selection. Despite using non-codon-optimized GFP, transgenic strains expressing fluorescent markers were obtained in both species. Additionally, an Auanema codon-optimized RFP construct showed robust expression in all tissues. This method will be valuable for future studies into the unusual sex determination, viviparity, and stress resistance in Auanema and Tokorhabditis .

    DOI: 10.17912/micropub.biology.001585

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  • First screening of microsporidia infecting nematodes in Japan Reviewed

    Kanata Ichiishi, Ryoji Shinya

    Nematological Research (Japanese Journal of Nematology)   54   1 - 7   2024.12

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:The Japanese Nematological Society  

    DOI: 10.3725/jjn.54.1

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  • The first record of hyperparasitism in mermithid nematodes Reviewed

    Yuta Fujimori, Natsumi Kanzaki, Ryoji Shinya

    Nematology   1 - 8   2024.11

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Brill  

    Summary

    The Mermithidae are primarily simple parasitoids of insects. In this study, we report the first observation of hyperparasitism by mermithid nematodes. Two Mermithidae individuals emerged from a specimen of the parasitoid wasp Coleocentrus incertus collected in Hokkaido, Japan. Although the nematodes were in the juvenile stage and many morphological characteristics were underdeveloped, we were able to observe cross fibre layers on the cuticles. A molecular sequence analysis of the 18S ribosomal DNA suggested that the nematode belonged to the genus Hexamermis, which was supported by the presence of the cross fibre layers. The phylogenetic analysis also suggested a close relationship between our specimens and ‘Mermithidae sp. NM1’, a taxon found in bumblebees, as differences between the sequences of the two taxa were minimal; however, further research is required to confirm the species’ identity. Hyperparasitism by nematodes is rare and is typically unsuccessful in non-host species, yet the nematodes in this study successfully parasitised a parasitoid wasp. Our study is the first to demonstrate that mermithid nematodes can exhibit hyperparasitism in addition to their known parasitic behaviour. The parasitic strategies of Mermithidae nematodes appear to be more flexible than previously assumed, indicating a high degree of adaptability as parasites.

    DOI: 10.1163/15685411-bja10370

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    Other Link: https://brill.com/downloadpdf/journals/nemy/aop/article-10.1163-15685411-bja10370/article-10.1163-15685411-bja10370.xml

  • Geographical distribution and phoretic associations of the viviparous nematode <i>Tokorhabditis atripennis</i> with <i>Onthophagus</i> dung beetles in Japan Reviewed

    Yuya Ikeda, Yuto Koike, Ryoji Shinya, Koichi Hasegawa

    Journal of Nematology   56 ( 1 )   2024.4

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    Publishing type:Research paper (scientific journal)   Publisher:Walter de Gruyter GmbH  

    Abstract

    Viviparity is generally considered to be rare in animals. In nematodes, only six species of Rhabditida are viviparous. Five of these species have been identified in association with Onthophagus dung beetles, with Tokorhabditis atripennis being repeatedly isolated from the dung beetle Onthophagus atripennis in Japan. T. atripennis is easy to culture in a laboratory setting, and its host, O. atripennis, is distributed all over Japan. Therefore, T. atripennis is an ideal candidate for ecological and evolutionary studies on viviparity. However, the extent of their distribution and relationship with dung beetles, as well as habitats, remain unclear. In the present study, we conducted field surveys and successfully isolated 27 strains of viviparous nematodes associated with tunneler dung beetles from various regions of Japan, all of which were identified as T. atripennis. T. atripennis exhibited a strong association with Onthophagus dung beetles, especially O. apicetinctus and O. atripennis. And it was predominantly found in specific anatomical locations on the beetle bodies, such as the ‘groove between pronotum and elytron’ and the ‘back of the wings’. Our findings suggest that Onthophagus species are the primary hosts for T. atripennis, and T. atripennis exhibits a close relationship with the living environments of tunneler beetles. This association may play a significant role in the evolution of viviparity in nematodes.

    DOI: 10.2478/jofnem-2024-0013

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  • Evolution of modes of nutrient absorption in entomoparasitic nematodes of the order Tylenchida revealed by structural and phylogenetic analysis Reviewed

    Ayumi Takahashi, Yuta Fujimori, Natsumi Kanzaki, Ryoji Shinya, Taisuke Ekino

    Nematology   26 ( 5 )   565 - 577   2024.4

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    Publishing type:Research paper (scientific journal)   Publisher:Brill  

    Summary

    Adult female entomoparasitic nematodes of the order Tylenchida have degenerate digestive organs and body surfaces that lack cuticles and are covered with microvilli. These morphologic features indicate that tylenchids absorb nutrients via the integument. A previous study hypothesised that the nutrient intake of entomoparasitic tylenchids evolved from oral to transdermal in a step-by-step manner, and this evolutionary process is reflected in the development of the integument ultrastructure of these species. However, the evolution of the nutrient absorption of entomoparasitic tylenchids remains unclear. This evolution has not been phylogenetically examined because of a lack of information on the integument structure associated with phylogenetic relationships. In the present study, we examined the integument ultrastructure and molecular sequence of four entomoparasitic tylenchids: Bradynema sp., Contortylenchus sp., C. genitalicola and Deladenus sp. The body surface of Bradynema sp. was covered with microvilli, suggesting that Bradynema sp. absorbs nutrients via the integument. By contrast, the body surfaces of Contortylenchus sp., C. genitalicola and Deladenus sp. were covered with a thin cuticle-like layer and well-developed epidermis without microvilli, suggesting that these species absorb nutrients only partially via the integument. We also classified the nutrient absorption mode based on the integument ultrastructure and molecular phylogenetic analysis of entomoparasitic tylenchids in previous studies. Our maximum parsimony analysis supported the step-by-step evolution hypothesised in the previous study. However, the parsimony analysis also generated new evolutionary processes in which atavism and/or saltation occur instead of stepwise evolution.

    DOI: 10.1163/15685411-bja10323

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    Other Link: https://brill.com/downloadpdf/journals/nemy/26/5/article-p565_6.xml

  • Mating sub-behaviours in Bursaphelenchus xylophilus on agar and evidence for female cooperation Reviewed

    Kentaro Doi, Ryoji Shinya

    Nematology   26 ( 3 )   309 - 317   2024.2

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Brill  

    Summary

    The pine wood nematode, Bursaphelenchus xylophilus, is the cause of pine wilt disease and reproduces by copulation within host pine trees. Female mate selection in B. xylophilus mating behaviour has been reported but definitive evidence is lacking. Furthermore, while the mating behaviour of the free-living nematode Caenorhabditis elegans on agar has been well understood, the mating behaviour of B. xylophilus on agar has not been studied in detail, and the differences in their characteristics remain unclear. Here, we addressed these knowledge gaps by observing B. xylophilus mating behaviour on agar. We identified six primary mating sub-behaviours in B. xylophilus males. Comparative analysis with C. elegans revealed distinct differences in the sequence of mating stages. Notably, B. xylophilus males actively searched for the female’s vulva during the wrapping stage, whereas females exhibited back-and-forth locomotion to align the male spicule with the vulva location. Additionally, we conducted mating assays using anaesthetised female nematodes to evaluate the female’s role in the mating behaviours of B. xylophilus. The mating duration increased significantly when females were anaesthetised, and the probabilities of reaching the wrapping and vulva location stages were reduced. Therefore, B. xylophilus females actively cooperate in mating behaviours. Our findings highlight unique aspects of mating behaviours in B. xylophilus and provide insights concerning differences in mating behaviours between B. xylophilus and C. elegans.

    DOI: 10.1163/15685411-bja10310

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    Other Link: https://brill.com/downloadpdf/journals/nemy/26/3/article-p309_6.xml

  • How did Bursaphelenchus nematodes acquire a specific relationship with their beetle vectors, Monochamus? Reviewed

    Haru Kirino, Noritoshi Maehara, Ryoji Shinya

    Frontiers in Physiology   14   2023.7

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Frontiers Media SA  

    For insect-borne pathogens, phoretic ability is important not only to spread more widely and efficiently but also to evolve virulence. Bursaphelenchus xylophilus, the causal agent of pine wilt disease, is transmitted by the cerambycid beetle Monochamus alternatus, which is associated with pine tree host. Their specific phoretic ability to appropriate vectors depending on their life cycle is critical for efficient transfer to the correct host and is expected to enhance virulence. We evaluated how B. xylophilus acquired a specific relationship with M. alternatus with a focus on Bursaphelenchus okinawaensis, a close relative of B. xylophilus that has evolved a relationship with a cerambycid beetle vector. Bursaphelenchus okinawaensis has a single dispersal stage (dauer) larva (third-stage dispersal [DIII] larva), whereas B. xylophilus has two distinct dispersal stages (DIII and fourth-stage dispersal [DIV] larva). Also, the dauer formation in B. okinawaensis is not completely dependent on its beetle vector, whereas DIV larvae of B. xylophilus are induced by volatile from the beetle vector. We investigated the induction conditions of dauer larvae in B. okinawaensis and compared to with B. xylophilus. The dauer percentages of B. okinawaensis significantly increased when the nematode population on the plate increased or when we propagated the nematodes with a crude extract of cultured nematodes, which likely contained dauer-inducing pheromones. In addition, dauer formation tended to be enhanced by the crude extract at high temperatures. Furthermore, when we propagated the nematodes with M. alternatus pupae until the beetles eclosed, B. okinawaensis significantly developed into dauer larvae. However, only 1.3% of dauer larvae were successfully transferred to M. alternatus, the rate lower than that of B. xylophilus. DIII and DIV of B. xylophilus were induced by increasing the nematode population and the presence of the beetle vector, respectively. These results suggest that B. okinawaensis has acquired specificity for the cerambycid beetle through dauer formation, which is efficiently induced in the presence of the beetle, and the DIV larval stage, exclusive to the xylophilus group, may be crucial for high transfer ability to the beetle vector.

    DOI: 10.3389/fphys.2023.1209695

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  • Highlighting Potential Physical And Chemical Cues Involved in Conspecific Recognition System in A Predator Nematode, Seinura Caverna Reviewed

    Taisuke Ekino, Toyoshi Yoshiga, Yuko Takeuchi-Kaneko, Yu Ichihara, Natsumi Kanzaki, Ryoji Shinya

    Integrative And Comparative Biology   2023.7

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Oxford University Press (OUP)  

    Abstract

    Conspecific recognition is the ability to distinguish and respond to individuals of the same species. In nematodes, this behavior can mediate aggregation, feeding behavior, or mating. Here, we investigated whether and how the predatory nematode Seinura caverna recognizes and avoids conspecifics to prey on. In predation assays, S. caverna did not kill conspecifics, but killed nematodes of three heterospecific species. Interestingly, S. caverna did not kill Ektaphelenchoides spondylis nematodes. S. caverna did not eject its stylet when encountering conspecifics or E. spondylis. The characterization of the internal cuticle structure of 13 nematode species suggested that the cuticle may play a role in the preying decision, as E. spondylis and S. caverna exhibited similar, type III, cuticle layers. Chemical extracts from S. caverna further repelled conspecifics. We discuss the potential hierarchical use of physical and chemical cues in S. caverna predation behavior and provide insights into the evolutionary adaptations and behavior of this organism.

    DOI: 10.1093/icb/icad105

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  • The developmental and structural uniqueness of the embryo of the extremophile viviparous nematode, Tokorhabditis tufae Reviewed

    Tatsuya Yamashita, Taisuke Ekino, Natsumi Kanzaki, Ryoji Shinya

    Frontiers in Physiology   14   2023.6

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    Viviparity, a reproductive form that supplies nutrients to the embryo during gestation, has repeatedly and independently occurred in multiple lineages of animals. During the convergent evolution of viviparity, various modifications of development, structure, and physiology emerged. A new species of nematode, Tokorhabditis tufae, was discovered in the alkaline, hypersaline, and arsenic-rich environment of Mono lake. Its reproductive form is viviparity because it is obligately live-bearing and the embryo increases in size during development. However, the magnitude of the increase in size and nutrient provisioning are unclear. We measured egg and embryo sizes at three developmental stages in T. tufae. Eggs and embryos of T. tufae at the threefold stage were respectively 2.6- and 3.6-fold larger than at the single-cell stage. We then obtained T. tufae embryos at the single-cell, lima bean, and threefold developmental stages and investigated the egg hatching frequency at three different concentrations of egg salt buffer. Removal of embryos from the uterus halted embryonic development at the single-cell and lima bean stages in T. tufae irrespective of the solution used for incubation, indicating the provision of nutrients within the uterus. Ultrastructural and permeability evaluation showed that the permeability barrier did not form during embryonic development, resulting in increased molecular permeability. This high permeability caused by the absence of the permeability barrier likely enables supply of nutrients from the mother. The structural and physiological modifications in T. tufae are like those in other viviparous animals. We conclude that T. tufae is a viviparous rather than an ovoviviparous nematode. T. tufae will facilitate investigation of the evolution of viviparity in animals.

    DOI: 10.3389/fphys.2023.1197477

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  • Onthodiplogaster japonica n. gen., n. sp. (Rhabditida: Diplogastridae) isolated from Onthophagus sp. (Coleoptera: Scarabaeidae) from Japan Reviewed

    Natsumi Kanzaki, Yuya Ikeda, Ryoji Shinya

    Scientific Reports   13 ( 1 )   2023.4

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Springer Science and Business Media LLC  

    Abstract

    A diplogastrid nematode was isolated from a dung beetle, Onthophagus sp., collected from a rotten mushroom in Kyoto, Japan. The species is characterised by its cheilostomatal shape, separated into 12 narrow plates (rugae), deep stegostom, large ellipsoidal amphids, conical female tail and characteristic receptaculum seminis in the female. Based on its phylogenetic status and stomatal composition, the species is typologically similar to two other diplogastrid genera, Neodiplogaster and Mononchoides. The species can be distinguished from these two genera by the size and shape of the amphid (small pore in Neodiplogaster), female tail shape (long and filiform in Mononchoides) and presence of receptaculum seminis (absence in the two nominal genera), and is described as a monotypic member of a new genus, Onthodiplogaster japonica n. gen., n. sp. Observation of feeding behaviour suggested that O. japonica n. gen., n. sp. does not show clear stomatal dimorphism or polymorphism, which is found in its close relatives, but the species can feed on nematodes (predation), fungi and bacteria. This monomorphic omnivory possibly represents its habitat of dung and other rotten materials, where the environment is biologically divergent, and its condition changes rapidly.

    DOI: 10.1038/s41598-023-33586-1

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    Other Link: https://www.nature.com/articles/s41598-023-33586-1

  • Predation drives convergent evolution of the thick and baggy cuticle in nematodes Reviewed

    Kanata Ichiishi, Taisuke Ekino, Natsumi Kanzaki, Ryoji Shinya

    Nematology   1 - 8   2022.9

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Brill  

    Summary

    The nematode cuticle is an important structure that provides protection from abiotic environmental stresses and natural enemies. The cuticle ultrastructure of a Myolaimus species (culture code NKZ384) isolated from Kyoto, Japan, was examined in relation to its avoidance of predation by an aphelenchoidid predator, Seinura caverna. The survivability of Myolaimus sp. co-cultured with the predator was examined and compared with those of four Poikilolaimus spp. previously reported by the present authors. Myolaimus and two of the four Poikilolaimus spp. share a ‘baggy’ cuticle and resisted predation effectively. However, the ultrastructure differed between these two genera: i.e., the cuticle of Myolaimus sp. is seven-zoned, while that of P. regenfussi and P. oxycercus is five-zoned. In addition, Myolaimus sp. does not possess the characteristic osmophilic zone reported in Poikilolaimus spp. Therefore, although the ultrastructure differs, the thick and baggy cuticle found in these two phylogenetically distant genera exhibits functional convergence to resist predation.

    DOI: 10.1163/15685411-bja10196

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    Other Link: https://brill.com/downloadpdf/journals/nemy/aop/article-10.1163-15685411-bja10196/article-10.1163-15685411-bja10196.xml

  • <i>Tokorhabditis tauri</i> n. sp. and <i>T. atripennis</i> n. sp. (Rhabditida: Rhabditidae), isolated from <i>Onthophagus</i> dung beetles (Coleoptera: Scarabaeidae) from the Eastern USA and Japan Reviewed

    Erik J. Ragsdale, Natsumi Kanzaki, Tatsuya Yamashita, Ryoji Shinya

    Journal of Nematology   54 ( 1 )   2022.8

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    Publishing type:Research paper (scientific journal)   Publisher:Walter de Gruyter GmbH  

    Abstract

    Two new species of Tokorhabditis, T. tauri n. sp. and T. atripennis n. sp., which were isolated from multiple Onthophagus species in North America and from O. atripennis in Japan, respectively, are described. The new species are each diagnosed by characters of the male tail and genitalia, in addition to molecular barcode differences that were previously reported. The description of T. tauri n. sp. expands the suite of known nematode associates of O. taurus, promoting ecological studies using a beetle that is an experimental model for insect–nematode–microbiota interactions in a semi-natural setting. Furthermore, our description of a third Tokorhabditis species, T. atripennis n. sp., sets up a comparative model for such ecological interactions, as well as other phenomena as previously described for T. tufae, including maternal care through obligate vivipary, the evolution of reproductive mode, and extremophilic living.

    DOI: 10.2478/jofnem-2022-0028

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  • Life history of plant-parasitic nematodes and a newly developed genetically tractable model, Bursaphelenchus okinawaensis

    Ryoji Shinya

    Japanese Journal of Pesticide Science   47 ( 2 )   83 - 87   2022.8

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    DOI: 10.1584/jpestics.w22-19

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  • Editorial: Global occurrence of pine wilt disease: Biological interactions and integrated management Reviewed

    Margarida Espada, Anna Filipiak, Hongmei Li, Ryoji Shinya, Claudia S. L. Vicente

    Frontiers in Plant Science   13   2022.7

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    DOI: 10.3389/fpls.2022.993482

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  • Possible stochastic sex determination in Bursaphelenchus nematodes. Reviewed International journal

    Ryoji Shinya, Simo Sun, Mehmet Dayi, Isheng Jason Tsai, Atsushi Miyama, Anthony Fu Chen, Koichi Hasegawa, Igor Antoshechkin, Taisei Kikuchi, Paul W Sternberg

    Nature communications   13 ( 1 )   2574 - 2574   2022.5

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    Sex determination mechanisms evolve surprisingly rapidly, yet little is known in the large nematode phylum other than for Caenorhabditis elegans, which relies on chromosomal XX-XO sex determination and a dosage compensation mechanism. Here we analyze by sex-specific genome sequencing and genetic analysis sex determination in two fungal feeding/plant-parasitic Bursaphelenchus nematodes and find that their sex differentiation is more likely triggered by random, epigenetic regulation than by more well-known mechanisms of chromosomal or environmental sex determination. There is no detectable difference in male and female chromosomes, nor any linkage to sexual phenotype. Moreover, the protein sets of these nematodes lack genes involved in X chromosome dosage counting or compensation. By contrast, our genetic screen for sex differentiation mutants identifies a Bursaphelenchus ortholog of tra-1, the major output of the C. elegans sex determination cascade. Nematode sex determination pathways might have evolved by "bottom-up" accretion from the most downstream regulator, tra-1.

    DOI: 10.1038/s41467-022-30173-2

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  • Reproductive plasticity in response to food source in the fungal-feeding nematode Bursaphelenchus okinawaensis Reviewed

    Yuta Fujimori, Taisuke Ekino, Ryoji Shinya

    Nematology   2022

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    DOI: 10.1163/15685411-bja10157

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  • Novel Functional Analysis for Pathogenic Proteins of Bursaphelenchus xylophilus in Pine Seed Embryos Using a Virus Vector. International journal

    Haru Kirino, Ken-Ichi Konagaya, Ryoji Shinya

    Frontiers in plant science   13   872076 - 872076   2022

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    Pine wilt disease (PWD), which is caused by the pine wood nematode Bursaphelenchus xylophilus, is among the most serious tree diseases worldwide. PWD is thought to be initiated by sequential excessive hypersensitive responses to B. xylophilus. Previous studies have reported candidate pathogenic molecules inducing hypersensitive responses in pine trees susceptible to B. xylophilus. The functions of some of these molecules have been analyzed in model plants using transient overexpression; however, whether they can induce hypersensitive responses in natural host pines remains unclear due to the lack of a suitable functional analysis method. In this study, we established a novel functional analysis method for susceptible black pine (Pinus thunbergii) seed embryos using transient overexpression by the Apple latent spherical virus vector and investigated five secreted proteins of B. xylophilus causing cell death in tobacco to determine whether they induce hypersensitive responses in pine. We found that three of five molecules induced significantly higher expression in pathogenesis-related genes ( p < 0.05), indicating hypersensitive response in pine seed embryos compared with mock and green fluorescence protein controls. This result suggests that tobacco-based screening may detect false positives. This study is the first to analyze the function of pathogenic candidate molecules of B. xylophilus in natural host pines using exogenous gene expression, which is anticipated to be a powerful tool for investigating the PWD mechanism.

    DOI: 10.3389/fpls.2022.872076

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  • Comparative Secretome and Functional Analyses Reveal Glycoside Hydrolase Family 30 and Cysteine Peptidase as Virulence Determinants in the Pinewood Nematode Bursaphelenchus xylophilus Reviewed

    Shinya R, Kirino H, Morisaka H, Takeuchi-Kaneko Y, Futai K, Ueda M

    Frontiers in Plant Science   12   640459   2021.3

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    Pine wilt disease, caused by the pinewood nematode, <italic>Bursaphelenchus xylophilus</italic>, is one of the world’s most serious tree diseases. Although the <italic>B</italic>. <italic>xylophilus</italic> whole-genome sequence and comprehensive secretome profile have been determined over the past decade, it remains unclear what molecules are critical in pine wilt disease and govern <italic>B. xylophilus</italic> virulence in host pine trees. Here, a comparative secretome analysis among four isolates of <italic>B. xylophilus</italic> with distinct virulence levels was performed to identify virulence determinants. The four candidate virulence determinants of <italic>B. xylophilus</italic> highly secreted in virulent isolates included lipase (Bx-lip1), glycoside hydrolase family 30 (Bx-GH30), and two C1A family cysteine peptidases (Bx-CAT1 and Bx-CAT2). To validate the quantitative differences in the four potential virulence determinants among virulence groups at the protein level, we used real-time reverse-transcription polymerase chain reaction analysis to investigate these determinants at the transcript level at three time points: pre-inoculation, 3 days after inoculation (dai), and 7 dai into pine seedlings. The transcript levels of <italic>Bx-CAT1</italic>, <italic>Bx-CAT2</italic>, and <italic>Bx-GH30</italic> were significantly higher in virulent isolates than in avirulent isolates at pre-inoculation and 3 dai. A subsequent leaf-disk assay based on transient overexpression in <italic>Nicotiana benthamiana</italic> revealed that the GH30 candidate virulent factor caused cell death in the plant. Furthermore, we demonstrated that Bx-CAT2 was involved in nutrient uptake for fungal feeding via soaking-mediated RNA interference. These findings indicate that the secreted proteins Bx-GH30 and Bx-CAT2 contribute to <italic>B. xylophilus</italic> virulence in host pine trees and may be involved in pine wilt disease.

    DOI: 10.3389/fpls.2021.640459

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  • マツ枯れの発病メカニズム解明に向けた研究最前線と将来展望 Invited Reviewed

    桐野巴瑠, 新屋良治

    森林遺伝育種   10 ( 1 )   14 - 19   2021.2

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  • Thick cuticles as an anti-predator defence in nematodes

    Kanata Ichiishi, Taisuke Ekino, Natsumi Kanzaki, Ryoji Shinya

    Nematology   24 ( 1 )   11 - 20   2021

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    DOI: 10.1163/15685411-bja10107

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  • Tokorhabditis n. gen. (Rhabditida, Rhabditidae), a comparative nematode model for extremophilic living Reviewed

    Kanzaki N, Yamashita T, Lee JS, Shih PY, Ragsdale EJ, Shinya R

    2021

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  • Thaumatin-like proteins and a cysteine protease inhibitor secreted by the pine wood nematode Bursaphelenchus xylophilus induce cell death in Nicotiana benthamiana Reviewed

    Haru Kirino, Kohki Yoshimoto, Ryoji Shinya

    PLOS ONE   15 ( 10 )   e0241613 - e0241613   2020.10

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    DOI: 10.1371/journal.pone.0241613

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  • Survey of mermithid nematodes (Mermithida: Mermithidae) infecting fruit-piercing stink bugs (Hemiptera: Pentatomidae) in Japan Reviewed

    Shu Watanabe, Ayaka Tsunashima, Kyo Itoyama, Ryoji Shinya

    Applied Entomology and Zoology   2020.10

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    DOI: 10.1007/s13355-020-00705-7

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    Other Link: http://link.springer.com/article/10.1007/s13355-020-00705-7/fulltext.html

  • Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1 Reviewed

    Simo Sun, Ryoji Shinya, Mehmet Dayi, Akemi Yoshida, Paul W. Sternberg, Taisei Kikuchi

    Microbiology Resource Announcements   9 ( 43 )   e01000-20.   2020.10

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    DOI: 10.1128/MRA.01000-20

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  • Ultrastructural plasticity in the plant-parasitic nematode, Bursaphelenchus xylophilus Reviewed International journal

    Taisuke Ekino, Haru Kirino, Natsumi Kanzaki, Ryoji Shinya

    Scientific Reports   10 ( 1 )   11576 - 11576   2020.7

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    Phenotypic plasticity is one of the most important strategies used by organisms with low mobility to survive in fluctuating environments. Phenotypic plasticity plays a vital role in nematodes because they have small bodies and lack wings or legs and thus, cannot move far by themselves. Bursaphelenchus xylophilus, the pathogenic nematode species that causes pine wilt disease, experiences fluctuating conditions throughout their life history; i.e., in both the phytophagous and mycetophagous phases. However, whether the functional morphology changes between the life phases of B. xylophilus remains unknown. Our study revealed differences in the ultrastructure of B. xylophilus between the two phases. Well-developed lateral alae and atrophied intestinal microvilli were observed in the phytophagous phase compared with the mycetophagous phase. The ultrastructure in the phytophagous phase was morphologically similar to that at the dauer stage, which enables the larvae to survive in harsh environments. It suggests that the living tree represents a harsh environment for B. xylophilus, and ultrastructural phenotypic plasticity is a key strategy for B. xylophilus to survive in a living tree. In addition, ultrastructural observations of obligate plant-parasitic species closely related to B. xylophilus revealed that B. xylophilus may be in the process of adapting to feed on plant cells.

    DOI: 10.1038/s41598-020-68503-3

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    Other Link: http://www.nature.com/articles/s41598-020-68503-3

  • Newly Identified Nematodes from Mono Lake Exhibit Extreme Arsenic Resistance Reviewed International journal

    Pei-Yin Shih, James Siho Lee, Ryoji Shinya, Natsumi Kanzaki, Andre Pires-da Silva, Jean Marie, Badroos, Elizabeth Goetz, Amir Sapir, Paul W. Sternberg, Co-first authors

    Current Biology   29 ( 19 )   3339 - 3344   2019.9

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    Extremophiles have much to reveal about the biology of resilience, yet their study is limited by sampling and culturing difficulties [1-3]. The broad success and small size of nematodes make them advantageous for tackling these problems [4-6]. We investigated the arsenic-rich, alkaline, and hypersaline Mono Lake (CA, US) [7-9] for extremophile nematodes. Though Mono Lake has previously been described to contain only two animal species (brine shrimp and alkali flies) in its water and sediments [10], we report the discovery of eight nematode species from the lake, including microbe grazers, parasites, and predators. Thus, nematodes are the dominant animals of Mono Lake in species richness. Phylogenetic analysis suggests that the nematodes originated from multiple colonization events, which is striking, given the young history of extreme conditions at Mono Lake [7, 11]. One species, Auanema sp., is new, culturable, and survives 500 times the human lethal dose of arsenic. Comparisons to two non-extremophile sister species [12] reveal that arsenic resistance is a common feature of the genus and a preadaptive trait that likely allowed Auanema to inhabit Mono Lake. This preadaptation may be partly explained by a variant in the gene dbt-1 shared with some Caenorhabditis elegans natural populations and known to confer arsenic resistance [13]. Our findings expand Mono Lake's ecosystem from two known animal species to ten, and they provide a new system for studying arsenic resistance. The dominance of nematodes in Mono Lake and other extreme environments and our findings of preadaptation to arsenic raise the intriguing possibility that nematodes are widely pre-adapted to be extremophiles.

    DOI: 10.1016/j.cub.2019.08.024

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  • Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network Reviewed

    Aoki Wataru, Matsukura Hidenori, Yamauchi Yuji, Yokoyama Haruki, Hasegawa Koichi, Shinya Ryoji, Ueda Mitsuyoshi

    SCIENTIFIC REPORTS   8 ( 1 )   2018.7

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    DOI: 10.1038/s41598-018-28653-x

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    Other Link: http://www.nature.com/articles/s41598-018-28653-x

  • Volatile nematode sex pheromones Reviewed

    Shinya Ryoji, Gronquist Mathew, Leighton Daniel, Hsueh Yen-Ping, Schroeder Frank, Sternberg Paul

    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY   254   2017.8

  • Morphological, molecular and developmental characterization of the thelastomatid nematode Thelastoma bulhoesi (de Magalhaes, 1900) (Oxyuridomorpha: Thelastomatidae) parasite of Periplaneta americana (Linnaeus, 1758) (Blattodea: Blattidae) in Japan Reviewed

    Sota Ozawa, Jans Morffe, Claudia S. L. Vicente, Kenji Ikeda, Ryoji Shinya, Koichi Hasegawa

    ACTA PARASITOLOGICA   61 ( 2 )   241 - 254   2016.3

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    DOI: 10.1515/ap-2016-0034

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  • Sex Attraction and Mating in Bursaphelenchus okinawaensis and B. xylophilus Reviewed

    Ryoji Shinya, Anthony Chen, Paul W. Sternberg

    JOURNAL OF NEMATOLOGY   47 ( 3 )   176 - 183   2015.9

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  • Catalases Induction in High Virulence Pinewood Nematode Bursaphelenchus xylophilus under Hydrogen Peroxide-Induced Stress Reviewed

    Claudia S. L. Vicente, Yoriko Ikuyo, Ryoji Shinya, Manuel Mota, Koichi Hasegawa

    PLOS ONE   10 ( 4 )   2015.4

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    DOI: 10.1371/journal.pone.0123839

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  • Evidence of Hermaphroditism and Sex Ratio Distortion in the Fungal Feeding Nematode Bursaphelenchus okinawaensis Reviewed

    Ryoji Shinya, Koichi Hasegawa, Anthony Chen, Natsumi Kanzaki, Paul W. Sternberg

    G3-GENES GENOMES GENETICS   4 ( 10 )   1907 - 1917   2014.10

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    DOI: 10.1534/g3.114.012385

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  • Making headway in understanding pine wilt disease: What do we perceive in the postgenomic era? Reviewed

    Ryoji Shinya, Hironobu Morisaka, Yuko Takeuchi, Kazuyoshi Futai, Mitsuyoshi Ueda

    JOURNAL OF BIOSCIENCE AND BIOENGINEERING   116 ( 1 )   1 - 8   2013.7

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  • Secretome Analysis of the Pine Wood Nematode Bursaphelenchus xylophilus Reveals the Tangled Roots of Parasitism and Its Potential for Molecular Mimicry Reviewed

    Ryoji Shinya, Hironobu Morisaka, Taisei Kikuchi, Yuko Takeuchi, Mitsuyoshi Ueda, Kazuyoshi Futai

    PLOS ONE   8 ( 6 )   2013.6

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    DOI: 10.1371/journal.pone.0067377

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  • Establishment of a set of inbred strains of the pine wood nematode, Bursaphelenchus xylophilus (Aphelenchida: Aphelenchoididae), and evidence of their varying levels of virulence Reviewed

    Ryoji Shinya, Yuko Takeuchi, Keita Ichimura, Shuhei Takemoto, Kazuyoshi Futai

    APPLIED ENTOMOLOGY AND ZOOLOGY   47 ( 4 )   341 - 350   2012.7

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    DOI: 10.1007/s13355-012-0124-8

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  • Future Biological Control for Soybean Cyst Nematode Reviewed

    Masanori Koike, Ryoji Shinya, Daigo Aiuchi, Manami Mori, Rui Ogino, Hiroto Shinomiya, Masayuki Tani, Mark Goettel

    Soybean Physiology and Biochemistry   doi: 10.5772/20690   193 - 208   2011.11

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  • Parasitic strategy of the pinewood nematode, Bursaphelenchus xylophilus, revealed by proteome analysis

    Shinya Ryoji, Morisaka Hironobu, Takeuchi Yuko, Kikuchi Taisei, Ueda Mitsuyoshi, Futai Kazuyoshi

    The Japanese Forest Society Congress   123   E11 - E11   2011

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    DOI: 10.11519/jfsc.123.0.E11.0

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  • Comparison of the Surface Coat Proteins of the Pine Wood Nematode Appeared During Host Pine Infection and In Vitro Culture by a Proteomic Approach Reviewed

    Ryoji Shinya, Hironobu Morisaka, Yuko Takeuchi, Mitsuyoshi Ueda, Kazuyoshi Futai

    PHYTOPATHOLOGY   100 ( 12 )   1289 - 1297   2010.12

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    DOI: 10.1094/PHYTO.04.10.0109

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  • The establishment of Bursaphelenchus xylophlius pure lines and its application: The importance of pure line in post-genomics

    Shinya Ryoji, Ichimura Keita, Takemoto Syuhei, Takeuchi Yuko, Ueda Mitsuyoshi, Futai Kazuyoshi

    The Japanese Forest Society Congress   121   164 - 164   2010

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    DOI: 10.11519/jfsc.121.0.164.0

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  • Surface coat proteins of the pine wood nematode, Bursaphelenchus xylophilus: profiles of stage- and isolate-specific characters Reviewed

    Ryoji Shinya, Yuko Takeuchi, Natsuko Miura, Kouichi Kuroda, Mitsuyoshi Ueda, Kazuyoshi Futai

    NEMATOLOGY   11   429 - 438   2009

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    DOI: 10.1163/156854109X447006

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  • A technique for separating the developmental stages of the propagative form of the pine wood nematode, Bursaphelenchus xylophilus Reviewed

    Ryoji Shinya, Yuko Takeuchi, Kazuyoshi Futai

    NEMATOLOGY   11 ( 2 )   305 - 307   2009

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    DOI: 10.1163/156854108X399164

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  • Variation in growth at different temperatures and production and size of conidia in hybrid strains of Verticillium lecanii (Lecanicillium spp.) (Deuteromycotina: Hyphomycetes) Reviewed

    Daigo Aiuchi, Yukiko Baba, Keigo Inami, Ryoji Shinya, Masayuki Tani, Masanori Koike

    APPLIED ENTOMOLOGY AND ZOOLOGY   43 ( 3 )   427 - 436   2008.8

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    DOI: 10.1303/aez.2008.427

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  • Potential of Lecanicillium spp. for management of insects, nematodes and plant diseases Reviewed

    Mark S. Goettel, Masanori Koike, Jeong Jun Kim, Daigo Aiuchi, Ryoji Shinya, Jacques Brodeur

    JOURNAL OF INVERTEBRATE PATHOLOGY   98 ( 3 )   256 - 261   2008.7

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    DOI: 10.1016/j.jip.2008.01.009

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  • Pathogenicity and its mode of action in different sedentary stages of Heterodera glycines (Tylenchida : Heteroderidae) by Verticillium lecanii hybrid strains Reviewed

    Ryoji Shinya, Daigo Aiuchi, Atsuhiko Kushida, Masayuki Tani, Katsuhisa Kuramochi, Masanori Koike

    APPLIED ENTOMOLOGY AND ZOOLOGY   43 ( 2 )   227 - 233   2008.5

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  • Effects of fungal culture filtrates of Verticillium lecanii (Lecanicillium spp.) hybrid strains on Heterodera glycines eggs and juveniles Reviewed

    Ryoji Shinya, Daigo Aluchi, Atsuhiko Kushida, Masayuki Tani, Katsuhisa Kuramochi, Masanorl Koike

    JOURNAL OF INVERTEBRATE PATHOLOGY   97 ( 3 )   291 - 297   2008.3

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  • A new method for producing hybrid strains of the entomopathogenic fungus Verticillium lecanii (Lecanicillium spp.) through protoplast fusion by using nitrate non-utilizing (nit) mutants Reviewed

    D. Aiuchi, K. Inami, M. Sugimoto, R. Shinya, M. Tani, K. Kuramochi, M. Koike

    Micologia Aplicada International   20 ( 1 )   1 - 16   2008.1

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  • Potential of Verticillium lecanii (Lecanicillium spp.) hybrid strains as biological control agents for soybean cyst nematode: Is protoplast fusion an effective tool for development of plant-parasitic nematode control agents? Reviewed

    Shinya Ryoji, Watanabe Ai, Aiuchi Daigo, Tani Masayuki, Kuramochi Katsuhisa, Kushida Atsuhiko, Koike Masanori

    Japanese Journal of Nematology   38 ( 1 )   9 - 18   2008

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    <I>Verticillium lecanii</I> is a potentially useful biological control agent (BCA) for soybean cyst nematode (SCN), <I>Heterodera glycines</I>. The objective of this study was to screen hybrid strains of <I>V. lecanii</I>, derived from protoplast fusion, for effective control agents of SCN, and to investigate whether the protoplast fusion technique is an effective tool for development of nematode control agents. Three parental strains (Vertalec&reg;, Mycotal&reg;, and B-2) and their 162 hybrid strains were screened in greenhouse pot tests. Some of these hybrid strains suppressed damage on soybean plants and reduced the density of SCN in the soil. In particular, one hybrid strain, AaF42, was observed to reduce the nematode egg density by 93.2% as compared with the control. Furthermore, this strain significantly reduced the cyst and egg density as compared with the parental strains. In conclusion, some of the hybrid strains exhibited enhanced biocontrol efficacy by protoplast fusion. Therefore, the protoplast fusion technique may be a potentially valuable tool for developing nematode-antagonistic fungi as BCA.

    DOI: 10.3725/jjn.38.9

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  • ワタアブラムシ、オンシツコナジラミに対する病原性と葉面上での生存能力に基づいたVerticillium lecanii (Lecanicillium spp.)プロトプラスト融合株の選抜 Reviewed

    相内大吾, 馬場ゆき子, 稲見圭吾, 新屋良治, 谷 昌幸, 倉持勝久, 堀江早弥佳, 小池正徳

    応用動物昆虫学会誌   51 ( 3 )   205 - 212   2007.8

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  • Screening of Verticillium lecanii (Lecanicillium spp.) hybrid strains based on evaluation of pathogenicity against cotton aphid and greenhouse whitefly, and viability on the leaf surface Reviewed

    Daigo Aiuchi, Yukiko Baba, Keigo Inami, Ryoji Shinya, Masayuki Tani, Katuhisa Kuramochi, Sayaka Horie, Masanori Koike

    JAPANESE JOURNAL OF APPLIED ENTOMOLOGY AND ZOOLOGY   51 ( 3 )   205 - 212   2007

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    DOI: 10.1303/jjaez.2007.205

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  • Reclassification of Japanese isolates of Verticillium lecanii to Lecanicillium spp. Reviewed

    Masanori Koike, Midori Sugimoto, Daigo Aiuchi, Hideyuki Nagao, Ryoji Shinya, Masayuki Tani, Katsuhisa Kuramochi

    JAPANESE JOURNAL OF APPLIED ENTOMOLOGY AND ZOOLOGY   51 ( 3 )   234 - 237   2007

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    DOI: 10.1303/jjaez.2007.234

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Books

  • 実験医学 2017年12月号 Vol.35 No.19 少数性生物学ってなんだ?〜少数の因子が生命システムを制御する

    新屋良治, 永井 健治( Role: ContributorOpinion-研究の現場から)

    羊土社  2017.11  ( ISBN:4758125023

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  • 線虫学実験

    新屋良治( Role: Contributor第6章 線虫のタンパク・遺伝子(核酸)実験法, Appendix 線虫タンパク質と寄生性の関係)

    京都大学学術出版会  2014  ( ISBN:9784876985388

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  • 微生物生態学への招待 : 森をめぐるミクロな世界

    新屋良治( Role: Contributor第 14 章 何もせずにいいとこ取り? ―マツノザイセンチュウの巧みな寄生戦略)

    京都大学学術出版会  2012  ( ISBN:9784876985975

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MISC

  • 極限環境に棲息する動物「線虫」

    山下達矢, 新屋良治

    月刊「細胞」   55 ( 14 )   48 - 51   2023.11

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  • 死の湖からヒトの500倍のヒ素耐性を持つ線虫を発見 – 極限環境生物の適応を理解する糸口に Invited

    academies Journal   2019.12

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  • Functional analysis of candidate pathogenic proteins secreted by Bursaphelenchus xylophilus using seed embryo of Japanese black pine

    桐野巴瑠, 吉本光希, 小長谷賢一, 新屋良治, 新屋良治

    Nematological Research   49 ( 2 )   2019

  • VIRULENCE AND OXIDATIVE STRESS RESPONSE OF THE PINE WOOD NEMATODE BURSAPHELENCHUS XYLOPHILUS.

    C. S. L. Vicente, Y. Ikuyo, R. Shinya, M. Mota, K. Hasegawa

    JOURNAL OF NEMATOLOGY   46 ( 2 )   252 - 252   2014.6

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    Language:English   Publishing type:Research paper, summary (international conference)  

    Web of Science

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  • Phenotypic and genotypic traits of recombinant inbred lines of pine wood nematode, Bursaphelenchus xylophilus Reviewed

    Tetsuro Kato, Akira Kaneko, Ryoji Shinya, Kazuyoshi Futai, Yuko Takeuchi

    IUFRO 2013 -Pine Wilt Disease Conference, Braunschweig, Germany   2013.10

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  • マツノザイセンチュウ重要形質の遺伝様式

    金子 彰, 新屋 良治, 二井 一禎, 竹内 祐子

    第124回日本森林学会大会   2013.3

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    Language:Japanese  

    DOI: 10.11519/jfsc.124.0.313.0

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  • マツノザイセンチュウ純系における病原力と媒介昆虫への便乗力との関係

    金子彰, 新屋良治, 新屋良治, 竹本周平, 二井一禎, 二井一禎, 竹内祐子

    Nematological Research   42 ( 2 )   2012

  • プロテオミクスで見えてくる宿主-病原体のインターフェース Reviewed

    新屋 良治, 森坂 裕信, 竹内 祐子, 植田 充美, 二井 一禎

    第122回日本森林学会大会   2011

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    DOI: 10.11519/jfsc.122.0.256.0

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  • マツノザイセンチュウ純系間における遺伝子発現プロファイルの比較

    金子彰, 新屋良治, 新屋良治, 竹本周平, 竹内祐子, 二井一禎

    Nematological Research   41 ( 2 )   2011

  • Comparison of the surface coat proteins of the pine wood nematode appeared during host pine infection and in vitro culture by a proteomic approach Reviewed

    Ryoji Shinya, Hironobu Morisaka, Yuko Takeuchi, Mitsuyoshi Ueda, Kazuyoshi Futai

    Phytopathology   100 ( 12 )   1289 - 1297   2010.12

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  • 学会報告 マツ材線虫病研究世界の動向--IUFR0 2009国際マツ材線虫病シンポジウムに参加して

    市村 慶太, 新屋 良治

    森林防疫   59 ( 3 )   111 - 117   2010

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    Language:Japanese   Publisher:全国森林病虫獣害防除協会  

    CiNii Research

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  • Establishment of the genetically uniformed pure-lines of the pine wood nematode, Bursaphelenchus xylophilus Reviewed

    Yuko Takeuchi, Ryoji Shinya, Keita Ichimura, Shuhei Takemoto, Kazuyoshi Futai

    30th International Symposium of the European Society of Nematologists   2010

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  • Pre-formed and induced chemical resistances found in pine wilt disease Reviewed

    Kazuyoshi Futai, Ryoji Shinya, Yuko Takeuchi

    30th International Symposium of the European Society of Nematologists   2010

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  • マツノザイセンチュウ同一系統内の病原力の多様性

    市村慶太, 新屋良治, 竹本周平, 竹内祐子, 二井一禎

    Nematological Research   39 ( 2 )   2009

  • 学会報告 マツ材線虫病研究最近の動向--第119回日本森林学会大会より

    新屋 良治, 前原 紀敏

    森林防疫   57 ( 4 )   145 - 149   2008

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    CiNii Research

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  • D318 ダイズシストセンチュウの異なるステージに対するVerticillium lecanii(Lecanicillium spp.)プロトプラスト融合株の病原性とその作用機作

    新屋 良治, 西島 賢, 相内 大吾, 串田 篤彦, 小池 正徳

    日本応用動物昆虫学会大会講演要旨   ( 51 )   71 - 71   2007.3

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    CiNii Research

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  • E126 昆虫寄生性Verticillium lecanii(Lecanicillium spp.)のプロトプラスト融合株、およびシスト分離菌によるダイズシストセンチュウに対する防除効果(一般講演)

    渡部 愛, 相内 大吾, 新屋 良治, 小池 正徳, 鈴木 裕志

    日本応用動物昆虫学会大会講演要旨   ( 50 )   81 - 81   2006.3

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    CiNii Research

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Presentations

  • 昆虫嗜好性Tylenchina 亜目線虫における条件的寄生と配偶子二型の進化的意義

    藤森 友太, 新屋良治, 神崎菜摘

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

    Presentation type:Oral presentation (general)  

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  • 線虫感染性RNAウイルスカタログの構築

    千葉悠斗, 田中龍聖, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • ナメクジ病原性線虫Pellioditisspp.の腹足類への誘引性

    市石宙, 佐藤綾香, 神崎菜摘, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • 鹿児島県のカドマルエンマコガネに便乗するSudhausia属未記載種

    大橋怜司, 神崎 菜摘, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • Bursaphelenchus okinawaensis の島特異的な生殖可塑性進化の解明

    木村拓己, 新屋 良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • 樹液に生息する線虫Bursaphelenchus tadamiensis のエタノール耐性

    吉冨恭果, 神崎菜摘, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • マツノザイセンチュウにおける性フェロモン受容体の探索

    上園駿, 桐野巴瑠, 中野 俊詩, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • マツ材線虫病の病原体Bursaphelenchus xylophilusとその近縁種における雑種形成の年次比較

    池田優月, 柳澤賢一, 石川直子, 陶山佳久, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • ニセフクロセンチュウの無摂食成長時における脂質代謝経路の解析

    亀田康平, 日髙旭峻, 吉竹悠宇志, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • サツマイモネコブセンチュウの卵嚢の形態変化と卵の孵化における水分条件の影響

    原田美希, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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    Event date: 2025.9

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  • 栄養物質イメージングに向けた極限環境に棲む胎生線虫Tokorhabditistufaeの形質転換手法の確立

    山下達矢, 蓮見麻有, 春田奈美, 杉本亜砂子, 新屋良治

    日本線虫学会大会第32回大会  2025.9 

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  • Experimental elucidation of horizontal gene transfer:Building a nematode model platform

    Ooi Y., Chiba Y., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • "RNA virus diversity in Caenorhabditis and Tokorhabditis nematodes revealed by high-throughput sequencing

    Chiba Y., Tanaka R., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • Natural hybridization and reproductive isolation between Bursaphelenchus xylophilus and B. mucronatus

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • Exploring olfactory-based sex pheromone receptors in Bursaphelenchus nematodes.

    Uezono S., Kirino H., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • Genetic basis of reproductive plasticity in Bursaphelenchus okinawaensis

    Kimura T., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • Attraction of slug-pathogenic nematodes, Pellioditis spp., to gastropods

    Ichiishi K., Sato A., Kanzaki N., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • Multiple interspecific comparisons revealed convergent evolution and transition from oviparity to viviparity in nematodes

    Yamashita T., Kanzaki N., Shinya R.

    The Future of Nematode Research  2025.8 

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    Event date: 2025.8

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  • DIVERSITY AND HOST ATTRACTION OF PELLIODITIS SPP. IN JAPAN AND PATHOGENICITY OF THEIR SYMBIOTIC BACTERIA IN SLUGS

    Ichiishi K., Sato A., Kanzaki N., Shinya R.

    The 64th Annual Meeting of the Society of Nematologists 

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    Event date: 2025.7

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  • マツノザイセンチュウと在来近縁種の共存下における個体群動態

    池田優月, 柳澤賢一, 石川直子, 陶山佳久, 新屋良治

    第136回日本森林学会大会  2025.3 

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  • コブマルエンマコガネに便乗する線虫の多様性と生活史

    池田 雄哉, 新屋 良治, 神崎 菜摘

    第69回日本応用動物昆虫学会大会  2025.3 

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  • Do viviparous nematodes have the tradeoff between progeny size and number?

    Yuya Ikeda, Ryoji Shinya, Natsumi Kanzaki

    2024.11 

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  • 線虫感染性 RNA ウイルスの網羅的探索

    千葉 悠斗, 新屋 良治

    日本微生物生態学会第37回広島大会  2024.10 

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  • サツマイモネコブセンチュウの性決定機構

    眞鍋 浩亮, 深山 敦司, 佐藤 一輝, 門田 康弘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • ナメ クジ病原性線虫Phasmarhabditis spp.はナメクジに対して多様な病原性を示す細菌を保有する

    市石 宙, 佐藤 綾香, 神崎 菜摘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • 極限環境に棲む胎生線虫Tokorhabditis tufaeの生活史の理解

    山下 達矢, 奥津 琉, 武田 奈々, 神崎 菜摘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • MIG-seq を用いたBursaphelenchus xylophilus とB. mucronatus の雑種の探索

    池田 優月, 柳澤 賢一, 石川 直子, 陶山 佳久, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • 樹液に生息する線虫Bursaphelenchus tadamiensisの環境耐性

    吉冨 恭果, 神崎 菜摘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • Heterorhabditis indicaが保有する共生細 菌種は生息環境によって異なる

    大橋 怜司, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • 自然環境における Bursaphelenchus okinawanensis の生活史の調査

    木村 拓己, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • サダエミナミヤスデにおける寄生性線虫の多様性

    藤森 友太, 神崎 菜摘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • Acrostichus属線虫における海浜環境への適応

    小栗 成稀, 浴野 泰甫, 神崎 菜摘, 新屋 良治

    日本線虫学会 第31回大会  2024.9 

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  • Hybrids detection between Bursaphelenchus xylophilus and B. mucronatus using MIG-seq

    2024 Korea-Japan Joint Symposium On Nematology  2024.9 

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  • Molecular mechanisms regulating sex differentiation of Meloidogyne incognita

    2024 Korea-Japan Joint Symposium On Nematology  2024.9 

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  • Distribution of Bursaphelenchus okinawaneis and related fungi from vector's body surface

    Kimura T, Shinya R

    2024 Korea-Japan Joint Symposium On Nematology  2024.9 

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  • Geographic patterns of symbiont species in Heterohabdtis indica

    Ohashi R, Shinya R

    2024 Korea-Japan Joint Symposium On Nematology  2024.9 

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  • New frontiers in the biology of Bursahphelenchus nematodes

    Shinya R

    2024 Korea-Japan Joint Symposium On Nematology  2024.9 

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  • Establishing transgenesis technique in the fungal feeding nematode Bursaphelenchus okinawaensis for Evo-Devo study

    2024.8 

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  • 栄養物質イメージングに向けた極限環境に棲む胎生線虫Tokorhabditis tufaeの形質転換手法の確立

    山下達矢, 蓮見麻有, 春田奈美, 杉本亜砂子, 新屋良治

    線虫研究の未来を創る会 2024  2024.8 

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  • C. elegans の嗅覚神経における異種GPCR発現系を利用したBursaphelenchus属線虫の揮発性性フェロモン受容体の探索

    上園駿, 桐野巴瑠, 中野俊詩, 新屋良治

    線虫研究の未来を創る会 2024  2024.8 

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  • ナメクジ病原性線虫Phasmarhabditis sp. SHR102 における雌雄同体の証拠と病原性・共生研究に向けた順遺伝学系の確立

    市石宙, 佐藤綾香, 新屋良治

    線虫研究の未来を創る会 2024  2024.8 

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  • From lakebed to lab: Tokorhabditis nematodes as a model for viviparous evolution.

    Shinya R, Yamashita T, Ikeda Y, Takeda N, Kikuchi T, Kanzaki N

    EvoWorm 2024  2024.6 

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  • Comprehensive virus investigation reveals diverse RNA viruses in Caenorhabditis and Tokorhabditis nematodes.

    Chiba Y, Shinya R

    EvoWorm 2024  2024.6 

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  • Cross-family phenotypic convergence in obligate viviparous nematodes: a morphological and physiological comparison of Tokorhabditis and Sudhausia.

    Yamashita T, Kanzaki N, Shinya R

    EvoWorm 2024  2024.6 

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  • Exploring genetic interactions in Bursaphelenchus species: implications for potential genetic pollution between Bursaphelenchus xylophilus and B. mucronatus.

    Ikeda Y, Yanagisawa K, Ishikawa N, Suyama Y, Shinya R

    35th International Symposium of the European Society of Nematologists  2024.4 

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  • Environmental tolerance of Bursaphelenchus tadamiensis in tree sap flow.

    Yoshitomi K, Shinya R

    35th International Symposium of the European Society of Nematologists  2024.4 

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Awards

  • 連合駿台会学術奨励賞

    2022.3   明治大学  

    新屋 良治

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  • 日本農学進歩賞

    2021.11   公益財団法人 農学会  

    新屋 良治

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  • Next Leader Award

    2019.8   Future of the nematodes studies  

    Ryoji Shinya

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Research Projects

  • Behavioral adaptation to arsenic-rich environments

    2025.11 - 2028.10

    Human Frontier Science Program organization (HFSPO)  Human Frontier Science Program (HFSP)  HFSP Research Grants

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  • 本当にマツを枯らした線虫だけが伝播されるのか? マツ材線虫病伝播機構の定説を覆す

    Grant number:25K22371  2025.6 - 2028.3

    日本学術振興会  科学研究費助成事業  挑戦的研究(萌芽)

    相川 拓也, 前原 紀敏, 新屋 良治, 桐野 巴瑠

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    Grant amount:\6370000 ( Direct Cost: \4900000 、 Indirect Cost:\1470000 )

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  • Hybridization of Pinewood Nematodes and Expansion Risk of Pine Wilt Disease in High-Altitude Regions

    Grant number:25K02027  2025.4 - 2028.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant amount:\18850000 ( Direct Cost: \14500000 、 Indirect Cost:\4350000 )

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  • 極限環境に棲む線虫で切り拓く動物胎生化の適応的意義と進化プロセス研究

    Grant number:23K17381  2023.6 - 2027.3

    日本学術振興会  科学研究費助成事業  挑戦的研究(開拓)

    新屋 良治, 神崎 菜摘, 菊地 泰生

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    Grant amount:\26000000 ( Direct Cost: \20000000 、 Indirect Cost:\6000000 )

    本課題研究では、高濃度ヒ素環境に適応し、胎生の繁殖様式を有する線虫を極限環境適応のモデル生物と位置づけ、線虫ヒ素耐性機構と胎生の繁殖様式の進化プロセスの解明に取り組む。2023年度はT. tufaeにおける形質転換体技術の確立、T. tufaeの生活環の解明、ゲノム解析に取り組んだ。線虫の形質転換体取得のためには一般的に、プラスミドベクターを生殖巣にマイクロインジェクションする方法と、プラスミドベクターを金粒子にコーテイングし、パーティクルガン法によって打ち込む方法が利用される。本研究では、パーティクルガン法を利用したT. tufae形質転換体の取得を試みた。パーティクルガン法によるT. tufaeの形質転換を試みた結果、現時点でF1からF4世代まで、安定して咽頭においてGFPを発現するラインを取得することに成功した。F1世代においては多くの個体が咽頭付近でGFPを発現した一方で、その多くがF2世代ではGFPの発現が見られなくなった。これらの個体においては射撃したプラスミドが染色体外で維持されており、その後脱落したと考えられる。F4世代において安定してGFPを発現したラインに関してはプラスミド配列がゲノム中に組み込まれた可能性が高い。次にT. tufaeの生活環を明らかにするために、出産直後の幼虫を観察した結果、出産食後の個体は耐久型幼虫もしくは、雌雄のL3幼虫であった。また、耐久型幼虫を大腸菌培地で培養した結果、すべての個体が雌雄同体成虫へと成長することが明らかになった。ゲノム解析に関してはアセンブルを取得し、現在gene annotationを実施している。

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  • Control of pine wilt disease, invasive alien species, tree diseases, and plant parasitic nematodes by the symbiotic bacteria of entomopathogenic nematodes

    Grant number:23K26957  2023.4 - 2026.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant amount:\18850000 ( Direct Cost: \14500000 、 Indirect Cost:\4350000 )

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  • 線虫の生活様式多様化と種分化に関する統合的研究

    Grant number:22H02690  2022.4 - 2026.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    神崎 菜摘, 菊地 泰生, 新屋 良治

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    Grant amount:\17160000 ( Direct Cost: \13200000 、 Indirect Cost:\3960000 )

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  • 線虫の生活様式多様化と種分化に関する統合的研究

    Grant number:23K23953  2022.4 - 2026.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    神崎 菜摘, 菊地 泰生, 新屋 良治

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    Grant amount:\17160000 ( Direct Cost: \13200000 、 Indirect Cost:\3960000 )

    1.ウメの落下果実特異的に検出され、ケシキスイに便乗する Caenorhabditis 属の1種、C. cf. parvicauda、に関して、形態的特徴、ドラフトゲノム情報をもとに種同定を行ったところ、既報の C. parvicauda と同種であることが確認された。
    2.上記、C. parvicauda に関して、京都において、ウメ落下果実特異的に検出されることは確認されているが、他地域での分離調査により、鹿児島、茨城両県からも、同様の環境で分離されることが確認された。これらの分離株は実験室条件で維持している。また、ゲノム情報取得のための純系株作成を行い、詳細なゲノム解読を開始した。
    3.前年度の調査で検出された培養不能種、Acrostichus sp. 2 に関して、培養条件を検討したところ、高浸透圧環境で、体表に付着していた未同定細菌を餌として培養可能であることを確認した。本種に関しては、採集地域の異なる2株を実験室株として確立した。
    4.高栄養環境に適応していると考えられる糞食性昆虫からの線虫分離を行ったところ、新属新種 Onthodiplogaster japonica、新種 Sachsia putridicola の検出、記載を行った。このうち、O. japonica は一種類の口腔形態で複数の餌資源を利用(糸状菌食、細菌食、捕食)することが確認されたことから本課題の材料として利用可能であると考える。
    5.口腔(口針)形態に糸状菌食、捕食の二型がみられる Bursaphelenchus sinensis に関しては、当初の実験用純系株の生育が不調であったため、再度作成し、食性範囲に関与する遺伝子群を対象としたゲノム解析を開始した。

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  • 植物寄生線虫における性決定カスケードの解明

    Grant number:22H02363  2022.4 - 2025.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    新屋 良治, 佐藤 一輝

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    Grant amount:\17420000 ( Direct Cost: \13400000 、 Indirect Cost:\4020000 )

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  • 植物寄生線虫における性決定カスケードの解明

    Grant number:23K23628  2022.4 - 2025.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    新屋 良治, 佐藤 一輝

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    Grant amount:\17420000 ( Direct Cost: \13400000 、 Indirect Cost:\4020000 )

    今年度はサツマイモネコブセンチュウの性決定を制御する分子機構を解明することを目的として、ウイルス誘導性ジーンサイレンシング(VIGS)を利用したサツマイモネコブセンチュウのtra-1ホモログ機能解析を行った。VIGS実験では、TRV RNA2ベクターにサツマイモネコブセンチュウのtra-1ホモログ配列断片304bpと575bp をそれぞれ挿入し、2種類のベクターを作製した。このTRVプラスミドを用いて形質転換したアグロバクテリウムをベンサミアナタバコの葉に感染させ、感染から10日後に線虫を1500頭ずつポットに接種した。線虫接種から10日後に、根に形成されたゴールを切り出し1.5 mLチューブに回収し、破砕した後RNAを抽出した。抽出したRNAからcDNAを合成し、tra-1ホモログの発現量を調査した。tra-1ホモログの発現量を比較するため、ハウスキーピング遺伝子としてタンパク質ジスルフィドイソメラーゼ(Disu)遺伝子を用いた。また、線虫接種から6週間後に、植物の根を水で洗って土を落とし、根の外部に露出したサツマイモネコブセンチュウの卵嚢を回収した。実体顕微鏡下で卵嚢を解剖し、卵嚢内の卵の数を計測し、雌1個体当たりの産卵数を計測した。実験の結果VIGSによるtra-1ホモログの発現抑制を試みた処理区において、産卵数を含め線虫の表現型の変化はほとんど観察されなかった。また、対照区と比較してtra-1遺伝子発現量の抑制も見られなかった。tra-1ホモログの発現抑制が見られなかった理由としては、線虫が目的遺伝子のRNAを植物から十分に取り込めていないことや、発現抑制は生じているものの性決定のタイミングとずれていることなどが考えられる。

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  • 線虫化学コミュニケーションの理解と寄生線虫防除への応用

    2022 - 2028

    科学技術振興機構  戦略的な研究開発の推進 創発的研究支援事業 

    新屋 良治

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    本研究のねらいは、植物寄生線虫の行動を制御する化学コミュニケーション分子と、それらを受容する分子神経基盤を理解し、環境負荷の低い、新しい植物寄生線虫防除技術を開発することです。フェーズ1ではマツ材線虫病の病原体であるマツノザイセンチュウの性フェロモンに焦点を絞り、性フェロモンの受容機構を分子•神経レベルで明らかにします。その後、線虫の繁殖を人為的に制御する全く新しい防除手法の開発を目指します。

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  • ゲノムワイド関連解析を用いたマツノザイセンチュウの病原性因子の探索

    Grant number:21H02249  2021.4 - 2024.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    秋庭 満輝, 菊地 泰生, 新屋 良治

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    Grant amount:\17550000 ( Direct Cost: \13500000 、 Indirect Cost:\4050000 )

    マツ材線虫病はマツノザイセンチュウを病原体とするマツの伝染病である。世界的に極めて重要な樹木病害であるが、未だにマツノザイセンチュウがマツを枯死させる仕組みについては完全には明らかにされていない。本課題では、日本国内から収集された約200系統の野生型マツノザイセンチュウのゲノム配列情報と病原性に関連する表現型形質のデータを基にゲノムワイド関連解析(GWAS)を実施し、マツノザイセンチュウの病原性に関与する遺伝子群を探索する。
    本年度は、マツノザイセンチュウの約200株についてマイクロサテライトマーカーを用いた解析を実施した。そのうちの約100株についてクロマツへの接種試験により病原力を評価するとともに菌糸上での増殖力を調査した。また、これら100株からDNAを抽出して全ゲノムシークエンス解析に供した。

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  • フラグメント分子軌道法による線虫誘引物質と受容体の解析と農薬開発への応用

    Grant number:20KK0135  2020.10 - 2024.3

    日本学術振興会  科学研究費助成事業  国際共同研究加速基金(国際共同研究強化(B))

    澤 進一郎, Tsai YiーLun, 新屋 良治, 門田 康弘

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    Grant amount:\17550000 ( Direct Cost: \13500000 、 Indirect Cost:\4050000 )

    植物感染性線虫の農業被害は、年間数十兆円と試算されている。本研究では、植物感染性線虫の感染機構において、植物の線虫誘引活性に注目し、植物と線虫の相互作用に関する研究を展開する。我々は、これまでに、サツマイモネコブセンチュウの植物誘引物質を複数単離してきており、受容体候補も得ている。本申請研究では、多くの線虫類のゲノム情報を用いて、誘引物質ー受容体の組合せに関する情報量を増やし、そのバリエーションについて網羅的に理解することを目的としている。2021年度は、植物感染性線虫の形質転換系の確立を目指した。VISUAL法を用いて、葉の細胞を維管束系の細胞に再分化させる実験系を確立させた。このVISUAL法を用いて、葉の細胞を分化転換させ、線虫を感染させたところ、葉の細胞にも線虫が感染出来ることを明らかにした。また、植物感染性線虫の水耕栽培培養系を用いて、成熟メスの詳細な観察を行い、卵発生中のメスへの形質転換を検討した。しかし、根の中のメスへの形質転換は難しいことが分かった。
    一方、線虫のエフェクター蛋白質であるMiEFF18について、その機能解析を行った。これにより、どのようなタンパク質が、植物ー植物感染性線虫との相互作用に必要か、その分子機構の一端を明らかにした。線虫のMiEFF18が、植物側のスプライソソーム, SmD1と結合することを明らかにした。また、これらの結合が、線虫感染後の巨大細胞の分化に必要であることを明らかにした。この成果を、論文として発表することができた。

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  • ウイルスベクターを用いたマツ材線虫病の分子機構の解明

    Grant number:19K15853  2019.4 - 2023.3

    日本学術振興会  科学研究費助成事業  若手研究

    新屋 良治

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    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

    マツノザイセンチュウ(以下、線虫)を病原体とするマツ材線虫病は、マツ類樹木に枯死を引き起こす深刻な樹木病害であり、防御応答の過剰誘導により樹木全体 が枯死すると考えられている。分子生物学的技術を使った大規模な研究により、線虫病原因子の候補が徐々に明らかとなってきているが、分子機能解析手法の不 足により病原因子の特定には未だ至っていない。私たちの研究チームは初年度に、木本類への外来遺伝子発現を可能にするALSV (Apple latent spherical virus)べクターを利用して、線虫由来の病原候補タンパク質をクロマツ種子の胚に一過的に発現させる系を確立した。2年度目は、クロマツ種子胚に線虫を直接 接種した際のPR遺伝子の応答を調査した。2020年度に得られた結果では、サンプル間の遺伝子発現量の差が大きくその後の実験を継続することは難しいと判断した。そこで2021年度は、ウイルス感染量を基準として、マツPR遺伝子の発現量をノーマライズすることを試みた。その結果、懸念であったサンプル間の遺伝子発現量の差を小さくすることに成功し、マツノザイセンチュウが分泌するソーマチン様タンパク質及びGH30が、マツ種子胚に対して顕著に防御応答を誘導することを明らかにした。マツ種子胚を用いたスクリーニングにおいて、従来から用いられてきたベンサミアナタバコを用いた場合と異なる結果となった分子が見られた。マツノザイセンチュウの本来の宿主であるマツにおいて外来タンパク質を発現させることが可能な本手法は今後マツノザイセンチュウ病原性因子の機能解析研究を大きく加速させる可能性がある。得られた成果は原著論文としてFrontiers in Plant Science誌に投稿し、2022年度に掲載された。

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  • Identification of the sex pheromone in the pinewood nematode, Bursaphelenchus xylophilus

    Grant number:17H07161  2017.8 - 2019.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Research Activity Start-up

    SHINYA RYOJI

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    Grant amount:\2730000 ( Direct Cost: \2100000 、 Indirect Cost:\630000 )

    To identify the sex pheromones of the pine wood nematode Bursaphelenchus xylophilus, GC-MS and chemotaxis assays were conducted. In this study, the four compounds were successfully identified as sex pheromones secreted by the female. This finding is useful for development of the new control method of the pine wood nematodes.

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  • マツノザイセンチュウの病原因子の解明とその進化的起源の検証

    Grant number:12J09215  2012.4 - 2015.3

    日本学術振興会  科学研究費助成事業  特別研究員奨励費

    新屋 良治

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    Grant amount:\8520000 ( Direct Cost: \7800000 、 Indirect Cost:\720000 )

    昨年度取得したゲノム情報をもとに、マツノザイセンチュウとその近縁種であるオキナワザイセンチュウ(Bursaphelenchus okinawaensis) を使ってトランスジェニック線虫の作製手法の開発に取り組んだ。オキナワザイセンチュウは雌雄同体(マツノザイセンチュウは雌雄異体)の種であることからトランスジェニックや遺伝子破壊株作製手法の開発を行なう上で有用な線虫種である。まず、複数のオキナワザイセンチュウプロモーター配列および3’UTR配列をGFPとともにプラスミドに組み込みトランスジェニック線虫作製用コンストラクトを作製した。マイクロインジェクション法を用いてトランスジェニック線虫の作製を試みたがマツノザイセンチュウやその近縁種では本手法により良い結果が得られなかった。次に、パーティクルガンを用いた手法を試した。本手法ではオキナワザイセンチュウにおいて比較的効率良くGFPを発現するトランスジェニック線虫を分離できるようになった。現在では世代を超えて効率良く導入遺伝子が受け継がれるように手法の最適化を行っている。さらに今年度はトランスジェニック線虫作製手法の開発と併せてCRISPR/Cas9法を用いた標的遺伝子破壊法の開発にも取り組んできた。まず取得したゲノム情報を下にC. elegansのdpy変異体の原因遺伝子のホモログ分子をオキナワザイセンチュウにおいて探索し、2つのdpy様遺伝子を標的とするsgRNAを作出した。このコンストラクトをCas9タンパク質をコードするmRNAさらには精製タンパク質と同時に線虫体内に導入することにより標的遺伝子破壊株の作出を試みている。現在までに目的変異体の取得には成功していないが、上記のトランスジェニック線虫作出手法の最適化と併せて条件の最適化を継続することにより近い将来に変異体の分離が行えると考えている。

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